DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7f and grik4

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:XP_031761990.1 Gene:grik4 / 100490768 XenbaseID:XB-GENE-1011875 Length:962 Species:Xenopus tropicalis


Alignment Length:445 Identity:84/445 - (18%)
Similarity:163/445 - (36%) Gaps:105/445 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 TVLTWHQP-PFVELVWDPKHNRSRGS----GFEIQLVEHLARRMNFSLELVNIALLRPNAYRLAE 289
            |:|.:.|. |:  |:....|....|:    ||.:.:::.||..:.|:.:   |.|:....|.:.|
 Frog   421 TILFFLQENPY--LMLKANHQELEGNDRYEGFCVDMLKELAAILRFNYK---IRLVADGVYGVPE 480

  Fly   290 --GSSEGPIEKLLQRNVNISMGYFRKTARRNQLLTTPMSYYSANLVAVLQLERYRIGSLALLVFP 352
              |:..|.:.:|:.|..::::.....||.|.:::.....:.:..:..:.::...|.......:.|
 Frog   481 LNGTWTGMVGELISRKADLAVAGLTITAEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDP 545

  Fly   353 FELSVWMLLLLALLIHLGIHLPSARRGNEE--------DGGGGLQVVALLLGAAL---------- 399
            |...||:.:|||.|....:....||....|        .|...|.|....||.:|          
 Frog   546 FSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQ 610

  Fly   400 --ARLPRSWRHRFIAAHWLWA-SIPLRISYQSLLFHLIRLQLYNTPSFSLDQLLAEG-------- 453
              ...||:...|.::..| || ::.:..||.:.|...:.:|..:.|..|:|.|..:.        
 Frog   611 GSTIAPRALSTRCVSGVW-WAFTLIIISSYTANLAAFLTVQRMDVPIESVDDLADQTTIEYGTIH 674

  Fly   454 -------FQGICTANTQRLLLEMPQLARDPDSIQSVDTPFDWDVLNVLTRNRNRKIFAVANQDVT 511
                   ||.......||:                      |:.::    ::...:|..:.::..
 Frog   675 GGSSMTFFQNSRYQTYQRM----------------------WNYMH----SKQPSVFVKSTEEGI 713

  Fly   512 LSFLHSSAHPNAFHVVKQPVNVEYA------------------GMYMPKHSFLYEKMDDDIRRLD 558
            ...|:|    |...:::..:|..|.                  |:.||..|...::.|..|.:|.
 Frog   714 ARVLNS----NYAFLLESTMNEYYRQRNCNLTQVGGLLDTKGYGIGMPVGSAFRDEFDLAILQLQ 774

  Fly   559 ASGFIHAWRRASF-ASVHRKEQVHMTSRRYINHAKLSGIYMVMAGLYLLAGLLFA 612
            .:..:...:|..: .....||:.|..  :.:....:.||::|     |:.||:.|
 Frog   775 ENNCLEDLKRKWWDGGKCPKEEDHRA--KGLGMENIGGIFVV-----LICGLIVA 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 25/133 (19%)
grik4XP_031761990.1 Periplasmic_Binding_Protein_type1 23..400 CDD:415822
PBP2_iGluR_kainate_KA1 414..788 CDD:270442 74/402 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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