DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7f and grin2b

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:764 Identity:133/764 - (17%)
Similarity:254/764 - (33%) Gaps:263/764 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 GYSIY----KSYLENS----------RIDMQGEDANLYVARALRLVIENVLAQLSTTLVVTISTR 68
            ||..:    :|.:|||          .:||..:|.:        ..|:|.|.:|.:.:::...|:
 Frog   173 GYQDFENKVRSTIENSFVGWELEEVIHLDMSLDDND--------SKIQNQLKKLQSPVILLYCTK 229

  Fly    69 HLGTAHWFEYMMNILMD----SWRMVAVQLLRIRPDLV---VNPVPGRKRVSLLMVDSYQGLLDT 126
            ...| :.||...::.:.    :|         |.|.||   .:.||......|:.|         
 Frog   230 EEAT-YIFEVAHSVGLTGYGYTW---------IVPSLVAGDTDTVPAEFPTGLISV--------- 275

  Fly   127 NITASNANFDDPDYYFIFLQARDHLIPKELQLILDHCLAHFWLHCNVMIQTAQVEVL-VYTYYPY 190
                   ::|:.| |.:..:.||.:                     .:|.||...:| .:...|.
 Frog   276 -------SYDEWD-YDLPARVRDGI---------------------AIITTAASTMLSEHNSIPQ 311

  Fly   191 TADACQ-------------KAYPIPVNTFDG------------------------RKWKASQMFP 218
            :..:|.             |.|.|.| ||:|                        |||:....:.
 Frog   312 SKSSCYNIQESRVYEAHMLKRYLINV-TFEGRNLSFSEDGYQMHPKLVIILLNQQRKWERVGKYK 375

  Fly   219 DKLSQM--------------------HGCPLTVLTWHQPPF--VELVWDP--------------- 246
            |:..:|                    |   |:::|..:.||  ||.| ||               
 Frog   376 DRSLKMKYYVWPVFELYPNSEEHKDEH---LSIVTLEEAPFVIVEDV-DPLSGTCMRNTVPCRKQ 436

  Fly   247 --KHNRSRG---------SGFEIQLVEHLARRMNFSLELVNIALLRPNAYRLAEGSSEGPIEKLL 300
              ..||:..         .||.|.:::.:|:.:.|:.:|..:.  .....:...|:..|.|.:::
 Frog   437 IRTENRTEEGGNYIKRCCKGFCIDILKKIAKTVKFTYDLYLVT--NGKHGKKINGTWNGMIGEVV 499

  Fly   301 QRNVNISMGYFRKTARRNQLLTTPMSYYSANLVAVLQLERYRIGSLALLVFPFELSVWMLLLLAL 365
            .:...:::|.......|::::...:.:....:..::......:...|.|. ||...||:::.:.|
 Frog   500 TKRAYMAVGSLTINEERSEVVDFSVPFIETGISVMVSRSNGTVSPSAFLE-PFSADVWVMMFVML 563

  Fly   366 LIHLGIH---------------LPSARRGNEEDGGGGLQV---VALLLGAAL-----ARLPRSWR 407
            ||...:.               |...|    |.||....:   :.||.|...     .:.|:...
 Frog   564 LIVSAVAVFVFEYFSPVGYNRCLADGR----EPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTT 624

  Fly   408 HRFIAAHWLWASIPLRISYQSLLFHLIRLQLYNTPSFSLDQ---LLAEGFQ-------------- 455
            .:.:.:.|.:.::....||.:.|...:..:.|      :||   |..:.||              
 Frog   625 SKIMVSVWAFFAVIFLASYTANLAAFMIQEEY------VDQVSGLSDKKFQRPNDFSPAFRFGTV 683

  Fly   456 --GICTANTQRLLLEMPQL------ARDPDSIQSVDTP------FDWDVLNVLT-RNRNRKIFAV 505
              |....|.:...|||...      ....|::.|:.|.      :|..|||.:. |:...|:..:
 Frog   684 PNGSTERNIRNNYLEMHSYMVKFNQRSVQDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTI 748

  Fly   506 ANQDV--TLSFLHSSAHPNAFHVVKQPVNVEYAGMYMPKHSFLYEKMDDDIRRLDASGFIHAWRR 568
            .:..|  |..:                      |:.:.|.|....::|..|.:|...|.:.....
 Frog   749 GSGKVFATTGY----------------------GIAIQKDSGWKRQVDLAILQLFGDGEMEELEA 791

  Fly   569 ASFASV-HRKEQVHMTSRRYINHAKLSGIYMVMAGLYLLAGLLFAGEVL 616
            .....: |.::...|:|:..|::  ::|::.::|....|:.:.|..|.|
 Frog   792 LWLTGICHNEKNEVMSSQLDIDN--MAGVFYMLAAAMALSLITFIMEHL 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 25/154 (16%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601 49/266 (18%)
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 74/438 (17%)
NMDAR2_C 837..1449 CDD:402274 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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