DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7f and grid2

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:XP_031759030.1 Gene:grid2 / 100487676 XenbaseID:XB-GENE-955038 Length:1007 Species:Xenopus tropicalis


Alignment Length:739 Identity:133/739 - (17%)
Similarity:240/739 - (32%) Gaps:236/739 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 RIDMQGEDANLYVARALRLVIENVLAQLSTTLVVTISTRHLG----------------TA----- 73
            |:..||.|..|.       .:||.:.::.|.|..|:....|.                ||     
 Frog   187 RVSQQGMDVALQ-------KVENNINRMITGLFATMRIEELNRYRDTLRRAILVMSPTTAKAFIT 244

  Fly    74 ------------HWFEYMMNIL-MDSWRMVAVQLLRIRPDLVVNPVP---------GRKRVSLLM 116
                        ||......|. :|...:|...:.|:.......|||         |..|:|..:
 Frog   245 EVVETNLVAFDCHWIIINEEINDLDVQELVRRSIGRLTIIRQTFPVPHNSSQRCFRGNHRISTSL 309

  Fly   117 VDSYQGLLDTNITASNANFDDPDYYFIFLQARDHLIPKELQLILDHCLAHF---------WLHCN 172
            .|. :.....|:..:|...    |..:.|.|  :...|:|:....|.:|..         |....
 Frog   310 CDP-KDPFSQNMEITNMYI----YDTVLLLA--NAFHKKLEDRKWHSMASLTCIRKNSKPWQGGR 367

  Fly   173 VMIQTAQ-----------------------VEVLVYTYYPYTADACQK-AYPIPVNTFDG----R 209
            .|::|.:                       .|:|...|........:| .:..||...:|    |
 Frog   368 SMLETVKKGGVSGLTGALDFSEDGGNPNIYFEILGTNYGEELGRGIRKLGFWNPVTGLNGSLTDR 432

  Fly   210 KWKASQMFPDKLSQMHGCPLTVLTWHQPPFV----ELVWDPKHNRSRGSGFEIQLVEHLARRMNF 270
            |.:         :.|.|..|.|.|..:.|||    .::..||    :..||.|.:::.|:..:.|
 Frog   433 KLE---------NNMRGVVLRVATVLEEPFVMVSENVLGKPK----KYQGFSIDVLDALSSYLGF 484

  Fly   271 SLELVNIALLRPNAYRLAEGSSEGPIEKLLQRNVNISMGYFRKTARRNQLLTTPMSYYSANLVAV 335
            ..| :.:|.........|:||..|.|.:||.:..::.:.....|..|..::.....|...::..:
 Frog   485 KYE-IYVASDHKYGSPQADGSWNGLIGELLLKRADMGISALTITPDRENVVDFTTRYMDYSVGVL 548

  Fly   336 LQLERYRIGSLALLVFPFELSVW-----MLLLLALLIHL--GIHLPSARRGNEE----------- 382
            |:.....:...|.|. ||:||:|     .:||:.||::|  .::.|..:.|:..           
 Frog   549 LRKAEKTVDMFACLA-PFDLSLWACIAGTVLLVGLLVYLLNWLNPPRLQMGSMTSTTLYNSMWFV 612

  Fly   383 -----DGGGGLQVVAL----LLGAALARLPRSWRHRFIAAHWLWA-------------------- 418
                 ..||.:....|    ::||        |        ||:|                    
 Frog   613 YGSFVQQGGEVPYTTLATRMMMGA--------W--------WLFALIVISSYTANLAAFLTISRI 661

  Fly   419 --------------SIPLRISYQSLLFHLIRLQLYNTPSFSLDQLLAEGFQGICTANTQRLLLEM 469
                          .||....:.|.::..:|::..|  .|..|.:.::.::.|..:|...     
 Frog   662 ESSIQSLQDLSRQTDIPYGTVFDSAVYEHVRVKGMN--PFERDSMYSQMWRMINRSNGSE----- 719

  Fly   470 PQLARDPDSIQSV---DTPFDWD--VLNVLTRNRNRKIF-----AVANQDVTLSFLHSSAHPNAF 524
            ..:....:.||.|   :..|.||  ||..:..|.....|     .:|::...::..|.|.:.:.|
 Frog   720 NNVQESLEGIQKVKHGNYAFVWDAAVLEYIAINDQDCSFYTVGNTIADRGYGIALQHGSPYRDIF 784

  Fly   525 HVVKQPVNVEYAG-MYMPKHSFLYEKMDDDIRRLDASGFIHAWRRASFASVHRKEQVHMTSRRYI 588
            .  ::.:.::..| |.:.||.:                    |.|.....:|........... :
 Frog   785 S--QRILELQQNGDMDILKHKW--------------------WPRNGQCELHSSMDTKQKGSS-L 826

  Fly   589 NHAKLSGIYMVMAGLYLLAGLLFA 612
            :....||::.::|     ||::.:
 Frog   827 DIKSFSGVFCILA-----AGIVLS 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 31/130 (24%)
grid2XP_031759030.1 Periplasmic_Binding_Protein_type1 28..429 CDD:415822 45/255 (18%)
PBP2_iGluR_delta_2 440..806 CDD:270449 77/416 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.