DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7f and grin2cb

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:723 Identity:129/723 - (17%)
Similarity:240/723 - (33%) Gaps:231/723 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 YSIYKSYLENSRIDMQGEDANL----YVARALRLVIENVLAQLSTTLVVTISTRHLGTAHWFEYM 79
            |.:|.|:.|...:.....|..|    |:.....|.:.|..|....:..|.:              
Zfish   232 YLVYCSHEEAQYLFRMASDVGLLGPGYIWIVPSLAVGNPEAAPPASFPVGV-------------- 282

  Fly    80 MNILMDSWRMVAVQLLRIRPDLVV---------------------NPVPGRKRVSLLMVDSYQGL 123
            ::|:.|.||....|.:|....::|                     :||......||     ::.:
Zfish   283 ISIITDRWRKTLRQRVREGVAIIVKGVHSFHKHRGFIPEGHSDCSSPVKSYANNSL-----FRHM 342

  Fly   124 LDTNITASNANFD------DPDYYFIFLQARDHLIPKELQLILDHCLAHFWLHCNVMIQTAQVEV 182
            |:.:....:.:|:      :|....|.|...:|                 |....          
Zfish   343 LNVSWEHKDLSFNSDGYLTNPSMVIIALDRENH-----------------WDKVG---------- 380

  Fly   183 LVYTYYPYTADACQKAYPIPVNTFDGRKWKASQMFPDKLS-QMHGCPLTVLTWHQPPF--VELVW 244
                  .|.....|..||:         |.....|.:.:| ..|   |||.|..:.||  ||.| 
Zfish   381 ------SYEGGILQMRYPV---------WPRYGSFLEPVSDNRH---LTVATLEERPFVIVESV- 426

  Fly   245 DP--------------KHNRSRG-------------SGFEIQLVEHLARRMNFSLELVNIALLRP 282
            ||              :.||:..             .||.|.:::.|:|.:.||.:|..:.  ..
Zfish   427 DPATGTCVRNTVPCRRQSNRTESIIGHTEPYTKLCCKGFCIDILKKLSRTIKFSYDLYLVT--NG 489

  Fly   283 NAYRLAEGSSEGPIEKLLQRNVNISMGYFRKTARRNQLLTTPMSYYSANLVAVLQLERYRIGSLA 347
            ...::..|...|.|.::..:..::::|.......|::::...:.:....:..::......:...|
Zfish   490 KHGKMVRGVWNGMIGEVFYKRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSA 554

  Fly   348 LLVFPFELSVWMLLLLALLIHLGI---------------HLPSARRGNEEDGGGGLQV---VALL 394
            .|. |:..:||:::.:..|..:.:               .|.||:    ..||....:   |.||
Zfish   555 FLE-PYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLVSAK----APGGPTFTIGKSVWLL 614

  Fly   395 LGAAL-----ARLPRSWRHRFIAAHWLWASIPLRISY-QSLLFHLIRLQLYNTPSFSLDQLLAE- 452
            .|...     ...|:....:.:...|.:.::....|| .:|...:|:.|..:|.|...|:...: 
Zfish   615 WGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQKP 679

  Fly   453 -------GFQGICTANTQR-LLLEMPQLARD---------PDSIQSVDTP------FDWDVLNV- 493
                   .|..:...:|:| :....|.:...         .:::.|:.|.      :|..|||. 
Zfish   680 QEHYPPFRFGTVPNGSTERNIRSNYPDMHTHMIKYNQKGVEEALNSLKTGKLDAFIYDAAVLNYM 744

  Fly   494 --------LTRNRNRKIFAVANQDVTLSFLHSSAHPNAFHVVKQPVN---VEYAGMYMPKHSFLY 547
                    |....:.|:||.....:.|.  ..|..       |:|::   :::.|          
Zfish   745 AGKDEGCKLVTIGSGKVFATTGYGIALQ--KDSRW-------KRPIDLALLQFLG---------- 790

  Fly   548 EKMDDDIRRLDASGFIHAWRRASFASVHRKEQVHMTSRRYINHAKLSGIY---MVMAGLYLLAGL 609
               |.|.:||:.     .|  .|....:.|.:| |:|:..|::  ::|::   :|..||.|   |
Zfish   791 ---DGDTQRLET-----VW--LSGICQNEKNEV-MSSKLDIDN--MAGVFYMLLVAMGLSL---L 839

  Fly   610 LFAGEVLL 617
            :||.|.||
Zfish   840 VFAWEHLL 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 27/155 (17%)
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 34/224 (15%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 77/440 (18%)
NMDAR2_C 845..>932 CDD:313729 2/3 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.