DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7e and gria1a

DIOPT Version :10

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_991161.1 Gene:gria1a / 798689 ZFINID:ZDB-GENE-020125-1 Length:914 Species:Danio rerio


Alignment Length:487 Identity:84/487 - (17%)
Similarity:156/487 - (32%) Gaps:169/487 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 PFLTLDEDQEEVLRVNGGYEG---RLLLALAEKMNFTIAVRKV---HVNMRDEALEM-------L 272
            |::.|.::.|. ...|..|||   .|...:|:.:.:...::.|   ....||....|       |
Zfish   416 PYVMLKKNHEH-FTGNDKYEGYCVELAAEIAKHVGYHYILKIVADGKYGARDAETMMWNGMVGEL 479

  Fly   273 RRDEVDLTLGGIRQTVARGMVATSSHNY----------HQTREVFGVLASSYELSSFDILFYPYR 327
            ...:.|:.:..:..|:.|..|...|..:          ..|:...||      .|..|.|.|   
Zfish   480 VYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTKSKPGV------FSFLDPLAY--- 535

  Fly   328 LQIWMGIL-GVVALSALIQLIVGRMLRERMGSRF------------------------------- 360
             :|||.|: ..:.:|.::.|:          |||                               
Zfish   536 -EIWMCIVFAYIGVSVVLFLV----------SRFSPYEWHADDCEDGAEENPNQPSSSSAQPGQN 589

  Fly   361 ---------------------WLNLELVFVGMPLLECPRSHTARLYCVMLMMYTLIIRTIYQGLL 404
                                 |.:|. .|:.......|||.:.|:...:...:||||.:.|...|
Zfish   590 QQNQNQQSQEQTNEFGIFNSLWFSLG-AFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANL 653

  Fly   405 YHLIRTHQLNRWPQTIESLVQKNFTVVLTPIVQEVLDEIPSVQHMRFRLLEANS----------- 458
            ...:          |:|.:|        :||  |..:::.....:.:..|:|.|           
Zfish   654 AAFL----------TVERMV--------SPI--ESAEDLAKQTEIAYGTLDAGSTKEFFRRSKIA 698

  Fly   459 ----------ELDPLYFLEANHQ----LRQ------HVTASALDIFIHFNRLSADKVHQRGEQGS 503
                      ..||..|::...:    :|:      ::..|.::.:|. .|...|.:...|...|
Zfish   699 VFEKMWSYMKSADPSVFVKTTDEGVMRVRKSKGKYAYLLESTMNEYIE-QRKPCDTMKVGGNLDS 762

  Fly   504 GAHFEIVPEDIISMQLTMYLAKHSFLIDQLNEEIMWMRSVGLL-SVWSRW-----ELSESYLRNE 562
            ..:....|             |.|.|.:.:|..::.:...||| .:.::|     |.......::
Zfish   763 KGYGIATP-------------KGSPLRNPVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSK 814

  Fly   563 QSFQVLGTMELYAIFLMVLVGLIVGLLVFILE 594
            .....|....:..:|.:::.||.:.:||.::|
Zfish   815 DKTSALSLSNVAGVFYILIGGLGLAMLVALVE 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 Periplasmic_Binding_Protein_Type_2 218..>313 CDD:473866 22/114 (19%)
gria1aNP_991161.1 Periplasmic_Binding_Protein_type1 26..390 CDD:471960
PBP2_iGluR_AMPA_GluR1 404..806 CDD:270447 76/445 (17%)
Lig_chan 536..835 CDD:459656 53/343 (15%)
Blue background indicates that the domain is not in the aligned region.

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