DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7e and grin3ba

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:464 Identity:86/464 - (18%)
Similarity:155/464 - (33%) Gaps:174/464 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 GYEGRLLLALAEKMNFTIAVRKVHVNMRDEALEMLRRDEVDL------------------TLGGI 284
            ||...||..|||.|:|                      |.||                  .:|.:
Zfish   522 GYCIDLLEKLAEDMHF----------------------EFDLYIVGDGKYGAWKGGRWSGLVGDL 564

  Fly   285 RQTVARGMVATSSHNYHQTREV----------FGVLASSYELSS-FDILFYPYRLQIWMGILGVV 338
            ...||...|.:.|.|..::|.:          .|:|..|.:.:: .....:|....:|:||...:
Zfish   565 LSGVADMAVTSFSINSARSRVIDFTSPFFSTSLGILVRSKDTAAPIGAFMWPLHWSMWVGIFVAL 629

  Fly   339 ALSALI---------------------------------QLIVGRMLRER----MGSRFWLNLEL 366
            .::||.                                 .::.||.:..:    ...||.:||..
Zfish   630 HITALFITLYEWNSPFGMTPHGRNRIRVFSYSSALNLCYAILFGRTVASKTPKCWTGRFLMNLWA 694

  Fly   367 VFVGMPLLECPRSHTARLYCVMLMMYTL-IIRTIYQGLLYH--------LIRTHQLNRWPQTIES 422
            :|..:.|    .|:||.|..||:...|. .:..|:...|:|        .:|       ..:.|.
Zfish   695 IFCLLVL----SSYTANLAAVMVGEKTFEEVSGIHDVKLHHPSLGFRFGTVR-------ESSAED 748

  Fly   423 LVQKNFTVVLTPIVQEVLDEIPSVQHMRFRLLEANSELDPLYFLEANHQLRQHVTASALDIFIHF 487
            .|:|:|               |.: |...|.....:..|.:..|:.:        ...||.||..
Zfish   749 YVKKSF---------------PEM-HEYMRRFNKPTTPDGVSTLKTD--------PPQLDAFIMD 789

  Fly   488 NRL-------SAD-KVHQRGE----QGSGAHFEIVPEDI-ISMQLTMYLAKHSF--LIDQLNEEI 537
            ..|       .|| |:...|:    :|.|..   :|::. ::..::.|::::..  .:|.|::: 
Zfish   790 KALLDYEVSIDADCKLLTVGKPFAIEGYGIG---LPQNSPLTRNVSEYVSRYKSDGYMDMLHDK- 850

  Fly   538 MWMRSVGLLSVWSRWELSESYLRNEQSFQVLGTMEL-----YAIFLMVLVGLIVGLLVFILELVS 597
             |.:.|..               .::.|.|..|:::     ..:|:::.||:...||..:.|...
Zfish   851 -WYKVVPC---------------GKRVFAVTETLQMGIQHFSGLFVLLCVGVAGALLTLLGEHAF 899

  Fly   598 MRSI--YLR 604
            .|.|  :||
Zfish   900 FRFILPHLR 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 21/102 (21%)
grin3baXP_021323058.1 Periplasmic_Binding_Protein_Type_1 26..428 CDD:324556
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 71/391 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591706
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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