DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7e and grin2da

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_009292354.1 Gene:grin2da / 449864 ZFINID:ZDB-GENE-041008-124 Length:1916 Species:Danio rerio


Alignment Length:593 Identity:113/593 - (19%)
Similarity:205/593 - (34%) Gaps:172/593 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 VPGRRHFNVIFTDSFAAFEEIRMEYYSREYNYNEHYFIFLQARDRLLQGEMRLIFDYC----WRY 149
            ||||..|          |..|.:.  .|:|::|         .|..|...:..:..|.    |. 
Zfish   380 VPGRIRF----------FSNITLS--GRDYSFN---------NDGYLANPLLDVISYTAGRGWE- 422

  Fly   150 RLIHCSIQVQKSNGDILFYSYYPFGEHGCSDMEPQLINRY--------NGSMLVEP--------- 197
                   :|......:|...|.|:..:| ..::|...:::        ...::|||         
Zfish   423 -------EVGWWENGVLRLRYPPWSRYG-PFLKPLDDSQHLRVVTLEERPFVIVEPADPGTGSCI 479

  Fly   198 -DLFPRKLRNFFGCPLRCALWDVPPFLTLDEDQEEVLRVNGGYEGRLLLALAEKMNFTIAVRKVH 261
             |..|.:|      ||..::        :.|..:.:.....|:...:|..||:.:.||..:..|.
Zfish   480 RDSVPCRL------PLNNSM--------VVEGIQSMKHCCKGFCIDVLKRLAKIVGFTYDLYLVT 530

  Fly   262 VNMRDEAL---------EMLRRDEVDLTLGGIRQTVARGMVATSSHNYHQTREVFGVLASSYELS 317
            .....:.:         |::.: ..|:.:|.:.....|..|...|..:.:|.....|..|:..:|
Zfish   531 NGRHGKNIDGQWNGMVGEVVSK-RADMAIGSLTINEERSEVVEFSVPFVETGISVMVSRSNGTVS 594

  Fly   318 SFDILFYPYRLQIWMGI----LGVVALSALI-----QLIVGRMLRERM---GSRF------WLNL 364
            ....| .||...:|:.:    |.|||::..|     .:...|.|:...   ||:|      ||..
Zfish   595 PSAFL-EPYSPAVWVMMFVMCLSVVAVTVFIFEFFSPVGYNRSLQSGKTAGGSKFTIGKSIWLLW 658

  Fly   365 ELVFVGMPLLECPRSHTARLYCVMLMMYTLIIRTIY-QGLLYHLIRTHQLNRWPQTIESLVQKNF 428
            .|||.....:|.||..|:::..::...:.:|....| ..|...:|:...::    |:..|..|.|
Zfish   659 ALVFNNSVPVENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYID----TVSGLSDKKF 719

  Fly   429 TVVLTPIVQEVLDEIPSVQHMRFRLLEANSELDPL---------YFLEANHQ----LRQHVTASA 480
                    |...::.|.   :||..:...|..:.:         |.:..|.:    ..:::....
Zfish   720 --------QHPTEQYPP---LRFGTVPNGSTEENIRSNYPNMHQYMVRNNQRGVEDAIENLKTGK 773

  Fly   481 LDIFIHFNRLSADKVHQRGEQ------GSGAHFEIV--------------PEDIISMQLTMYLAK 525
            ||.|| ::....:.:.::.|.      |||..|...              |.|:..:||.     
Zfish   774 LDAFI-YDAAVLNYMARKDEGCKVMTIGSGKVFATTGYGVALHKNSRWKRPLDLALLQLV----- 832

  Fly   526 HSFLIDQLNEEIMWMRSVGLLSVWSRWELSESYLRNEQSFQVLGTM----ELYAIFLMVLVGLIV 586
            ....||.|  |.:|:                |.:.:....:|:.:.    .:..:|.|:||.:.:
Zfish   833 GDDEIDML--ERLWL----------------SGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGL 879

  Fly   587 GLLVFILE 594
            .||||..|
Zfish   880 SLLVFAWE 887

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 16/103 (16%)
grin2daXP_009292354.1 PBP1_iGluR_NMDA_NR2 42..441 CDD:107373 18/89 (20%)
PBP2_iGluR_NMDA_Nr2 452..851 CDD:270436 83/453 (18%)
HisJ <507..>590 CDD:223904 15/83 (18%)
Lig_chan 605..877 CDD:278489 59/310 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591665
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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