DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7e and GluRIB

DIOPT Version :10

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster


Alignment Length:259 Identity:57/259 - (22%)
Similarity:98/259 - (37%) Gaps:48/259 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   360 FWLNLELVFVGMPLLECPRSHTARLYCVMLMMYTLIIRTIYQGLLYHLIRTHQLNRWPQTIESLV 424
            ||.:| ..|:.......|||.:.|:.......:|||:.:.|...|...:          |:|.:|
  Fly   743 FWFSL-AAFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFL----------TVERMV 796

  Fly   425 QKNFTVVLTPIVQEVLDEIPSVQHMRFRLLEANSELDPLYFLEANHQL----------RQHVTAS 479
                    |||...  :::.....:::..|...|..|  :|..:...|          |:||...
  Fly   797 --------TPINSP--EDLAMQTEVQYGTLLHGSTWD--FFRRSQIGLHNKMWEYMNSRKHVFVP 849

  Fly   480 ALDIFIHFNRLSADKVHQRGEQGSGAHFEIVPEDIISMQLTMYLAKHSF---------LIDQLNE 535
            ..|..|...|.|..|.....|.....:.. ..|...:|::...|....|         |.|.:|.
  Fly   850 TYDEGIKRVRNSKGKYALLVESPKNEYVN-AREPCDTMKVGRNLDTKGFGIATPLGSALKDPINL 913

  Fly   536 EIMWMRSVG-LLSVWSRW--ELSE--SYLRNEQSFQVLGTMELYAIFLMVLVGLIVGLLVFILE 594
            .::.::..| |:.:.::|  |.:|  ::...|.|...|....:..||.:::.||:|.:.|.|||
  Fly   914 AVLTLKENGELIKLRNKWWYEKAECSTHKDGETSHSELSLSNVAGIFYILIGGLLVSVFVAILE 977

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 Periplasmic_Binding_Protein_Type_2 218..>313 CDD:473866
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..480 CDD:380603
PBP2_iGluR_AMPA 497..938 CDD:270433 44/218 (20%)
Lig_chan 630..966 CDD:459656 50/246 (20%)
Blue background indicates that the domain is not in the aligned region.

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