DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7e and Nmdar1

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster


Alignment Length:590 Identity:120/590 - (20%)
Similarity:203/590 - (34%) Gaps:176/590 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 NYNEHYFIFLQARDRLLQGEM-RLIFDYCWRYRLIHCSIQVQKSNGDILFYSY-----------Y 171
            |:.....:|...:.|.:.||. ::.||                .|||.::..|           :
  Fly   330 NWESGKRLFQYLKSRNITGETGQVAFD----------------DNGDRIYAGYDVINIREQQKKH 378

  Fly   172 PFGEHGCSDMEPQLINRYNGSMLVEPDLFPRKLRNFFGCP--LRCALWDVPPFLTL-----DE-- 227
            ..|:.....|..::..|.|.|.::.|....||..... .|  ||....:..||:.:     ||  
  Fly   379 VVGKFSYDSMRAKMRMRINDSEIIWPGKQRRKPEGIM-IPTHLRLLTIEEKPFVYVRRMGDDEFR 442

  Fly   228 ---DQEEVLRVNG-----------GYEGRLLLALAEKMNFTIAV------RKVHVNMRDEALEML 272
               |:......|.           ||...||:.|::::|||..:      :..|..:|:....|.
  Fly   443 CEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILRNNTGAMT 507

  Fly   273 RRDEVDLTLGGIRQTVARGMVATSSHN-----YHQTREVF---GVL------ASSYELSSFDILF 323
            .|.|....:|.:....|..:||..:.|     |.:..:.|   |:.      :.|..|.||   .
  Fly   508 LRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSRSSTLVSF---L 569

  Fly   324 YPYRLQIWMGILGVVALSALIQLIVGRML-------------RER---MGSRFWLNLELVFVGMP 372
            .|:...:|:.::..|.:.||:..::.|..             .|:   :.|..|      |....
  Fly   570 QPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNEEKALNLSSAVW------FAWGV 628

  Fly   373 LLE------CPRSHTARLYCVMLMMYTLIIRTIYQGLLYHLI-------RTHQLN--RWPQTIES 422
            ||.      .|||.:||:..::...:.:||...|...|...:       :...:|  |...|:|:
  Fly   629 LLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMEN 693

  Fly   423 L---VQKNFTVVLTPIVQEVLDEIPSVQHMRFRLLEANSELDPLY-FLEANH-----QLRQHVTA 478
            |   ..|..:|                 .|.||   ...||..:| .:|||:     |..|.|..
  Fly   694 LTCATVKGSSV-----------------DMYFR---RQVELSNMYRTMEANNYATAEQAIQDVKK 738

  Fly   479 SALDIFI-HFNRL-----------SADKVHQRGEQGSGAHFEIVPEDIISMQLTMYLAKHSFLID 531
            ..|..|| ..:||           :|.::..|...|.|                  |.|.|...|
  Fly   739 GKLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIG------------------LQKGSPWTD 785

  Fly   532 QLNEEIMWMRSVGLL-SVWSRWELSESYLRNEQSFQ----VLGTMELYAIFLMVLVGLIVGLLVF 591
            .:...|:.....|.: .:..:|.......:|.:.|:    .||...:..:|::|.||:..|:.:.
  Fly   786 AVTLAILEFHESGFMEKLDKQWIFHGHVQQNCELFEKTPNTLGLKNMAGVFILVGVGIAGGVGLI 850

  Fly   592 ILELV 596
            |:|::
  Fly   851 IIEVI 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 27/135 (20%)
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 16/90 (18%)
ANF_receptor 58..371 CDD:279440 11/56 (20%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 91/447 (20%)
HisJ 451..>558 CDD:223904 22/106 (21%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 29/143 (20%)
Lig_chan 575..838 CDD:278489 60/306 (20%)
CaM_bdg_C0 854..882 CDD:287524 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463047
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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