DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7e and GluRIIE

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:651 Identity:126/651 - (19%)
Similarity:214/651 - (32%) Gaps:231/651 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 FREWGLAPLQI------------VNVLRGVPWHPVP---GRRHFNVIFTDSFAAFEEIRMEYYSR 116
            ||. |..|:.:            ...|:.:|:.|:|   .:|..:|  .|..::|          
  Fly   295 FRN-GSCPITVEMALTYDAVQLFAQTLKNLPFKPMPQNCSQRTESV--RDDGSSF---------- 346

  Fly   117 EYNYNEHYFIFLQARDRLLQGEMRLIFDYCWRYRLIHCSIQVQKS-NGDILFYSYYPFG--EHGC 178
                 ::|...|:..||||.|.             |:....|:|. :.|::  ...|.|  :.|.
  Fly   347 -----KNYMRTLRLTDRLLTGP-------------IYFEGNVRKGYHLDVI--ELQPSGIVKVGT 391

  Fly   179 SDMEPQLINRYNGSMLVEPDLFPRKLRN--FFGCPLRCALWDVP--PFLTLDEDQEEVLRVNGGY 239
            .|.:.|...:.......:.|.....|.|  |.      .|..||  |:..|.|..:: |..|..|
  Fly   392 WDEDRQYRPQRLAPTTAQFDSVDNSLANKTFI------ILLSVPNKPYAQLVETYKQ-LEGNSQY 449

  Fly   240 EG---RLLLALAEKM--NFTIA-------------------VRKVHVNMRDEALEML-----RRD 275
            ||   .|:..||:|:  |||..                   :|::.....|.|:..|     |..
  Fly   450 EGYGVDLIKELADKLGFNFTFVNGGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQ 514

  Fly   276 EVDLTLG----GIRQTVARGMVATSSHNYHQTREVFGVLASSYELSSFDILFYPYRLQIW----M 332
            .:|.|:.    ||.....:...||.                  ||.:|   ..|:..::|    .
  Fly   515 ALDFTIPFMNLGIAILYLKPQKATP------------------ELFTF---MDPFSEEVWWFLGF 558

  Fly   333 GILGVVALSALIQLIVGRML-------------RERMGSRFWLNLELVFVGMPLLE-----CPRS 379
            ..|||    :|...|:||:.             .|.:.::|.|...:.|....||:     .|::
  Fly   559 SFLGV----SLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSEIGPKA 619

  Fly   380 HTARLYCVMLMMYTLIIRTIYQGLLYHLIRTHQLNRWPQTIE---SLVQKNFTVVLTPIVQEVLD 441
            .:.|........:|||:.:.|...|...:          |||   ||:..         |.::.|
  Fly   620 LSTRTVASFWWFFTLIVVSSYTANLAAFL----------TIEKPQSLINS---------VDDLAD 665

  Fly   442 EIPSVQH-----------------MRFRLLEANSELDPLYFLEANHQLRQHVTASALDIF----- 484
            ....|.:                 .|::.:......:|.|..|.|.:....|..:....|     
  Fly   666 NKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKFMSENPQYLTEDNMEGVNRVKTNTHYAFLMEST 730

  Fly   485 -IHFNRLSADKVHQRG----EQGSGAHFEIVPEDIISMQLTMYLAKHSFLIDQLNEEIMWMRSVG 544
             |.:|......:.:.|    |:|.|          |:|:...   .|.   .:.|..::.::..|
  Fly   731 SIEYNTKRECNLKKIGDALDEKGYG----------IAMRKDW---PHR---GKFNNALLELQEQG 779

  Fly   545 LL-SVWSRWELSESYLRNEQSFQVLGTME------------LYAIFLMVLVG----LIVGLLVFI 592
            :| .:.::|       .||....:..|.|            |..:|.::|||    |:.|::.::
  Fly   780 VLEKMKNKW-------WNEVGTGICATKEDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWV 837

  Fly   593 L 593
            |
  Fly   838 L 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 28/129 (22%)
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 27/133 (20%)
ANF_receptor 51..382 CDD:279440 23/119 (19%)
PBP2_iGluR_Kainate 419..790 CDD:270432 84/444 (19%)
Lig_chan 551..824 CDD:278489 56/318 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462854
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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