DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7e and Gria2

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001077280.1 Gene:Gria2 / 29627 RGDID:61862 Length:883 Species:Rattus norvegicus


Alignment Length:439 Identity:79/439 - (17%)
Similarity:163/439 - (37%) Gaps:94/439 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 PFLTLDEDQEEVLRVNGGYEGRLLLALAE-------KMNFTI------AVRKVHVNMRDEALEML 272
            |::.:.:: .|:|..|..|||..:...||       |...||      ..|.....:.:..:..|
  Rat   425 PYVMMKKN-HEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGEL 488

  Fly   273 RRDEVDLTLGGIRQTVARGMVATSSHNYHQTREVFGVLASSYELSSFDILFY--PYRLQIWMGIL 335
            ...:.|:.:..:..|:.|..|...|..:....  ..::....:.|...:..:  |...:|||.|:
  Rat   489 VYGKADIAIAPLTITLVREEVIDFSKPFMSLG--ISIMIKKPQKSKPGVFSFLDPLAYEIWMCIV 551

  Fly   336 GVVALSALIQLIVGRML------------RERMGSR----------FWLNLELVFVGMPLLECPR 378
            ......:::..:|.|..            ||...|.          .|.:|. .|:.......||
  Rat   552 FAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLG-AFMRQGCDISPR 615

  Fly   379 SHTARLYCVMLMMYTLIIRTIYQGLLYHLIRTHQLNRWPQTIESLVQKNFTVVLTPIVQEVLDEI 443
            |.:.|:...:...:||||.:.|...|...:          |:|.:|        :||  |..:::
  Rat   616 SLSGRIVGGVWWFFTLIIISSYTANLAAFL----------TVERMV--------SPI--ESAEDL 660

  Fly   444 PSVQHMRFRLLEANSELDPLYFLEAN----HQLRQHVTASALDIFIHFNRLSADKVHQ-RGEQGS 503
            .....:.:..|::.|..:  :|..:.    .::..::.::...:|:   |.:|:.|.: |..:|.
  Rat   661 SKQTEIAYGTLDSGSTKE--FFRRSKIAVFDKMWTYMRSAEPSVFV---RTTAEGVARVRKSKGK 720

  Fly   504 GAH-FEIVPEDIISMQL---TMYLA-------------KHSFLIDQLNEEIMWMRSVGLL-SVWS 550
            .|: .|....:.|..:.   ||.:.             |.|.|.:.:|..::.:...||| .:.:
  Rat   721 YAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKN 785

  Fly   551 RW-----ELSESYLRNEQSFQVLGTMELYAIFLMVLVGLIVGLLVFILE 594
            :|     |.......:::....|....:..:|.:::.||.:.:||.::|
  Rat   786 KWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 19/104 (18%)
Gria2NP_001077280.1 PBP1_iGluR_AMPA_GluR2 28..397 CDD:107384
ANF_receptor 56..379 CDD:279440
PBP2_iGluR_AMPA 413..794 CDD:270433 71/397 (18%)
Glutamate binding 499..501 0/1 (0%)
Lig_chan 545..824 CDD:278489 53/304 (17%)