DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7e and glr-3

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_492017.3 Gene:glr-3 / 172449 WormBaseID:WBGene00001614 Length:836 Species:Caenorhabditis elegans


Alignment Length:526 Identity:95/526 - (18%)
Similarity:194/526 - (36%) Gaps:142/526 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 IHCSIQVQKSNGDILFY----SYYPFGE-----HGCSDMEPQLINRYNGSMLVEPDLFPRKLRNF 207
            :|.:...::||..:..|    |:..|.|     ...:..|..:|...:..:.:|           
 Worm   346 LHWAPSGERSNYTLHVYRRTLSFQKFAEWSSRTRRIASSEAVVIANSSEKLTLE----------- 399

  Fly   208 FGCPLRCALWDVPPFLTLDEDQEEVLRVNGGYEG---RLLLALAEKMNFTIAVRKVHVNMRDEA- 268
             |..|:.:::...||:        ::..||.|||   .||..:|..:.||..::||    ||.| 
 Worm   400 -GKHLKISVYLEAPFV--------MITSNGSYEGYCIDLLHKIANILKFTYTIQKV----RDNAY 451

  Fly   269 ------------LEMLRRDEVDLTLGGIRQTVARGMVATSSHNYHQTREVFGVLASSYELSSFDI 321
                        :..|:|.:.||.:..:..:..|..|...:..|....  ..:|.....:...|.
 Worm   452 GSKESNGKWSGMVGELQRGDADLAVASLTISYGRSEVIDFTVPYMHLG--ISILFKKPRIRDSDW 514

  Fly   322 LFY--PYRLQIW-MGILGVVALSALIQLIVGRMLRER------------------MGSRFWLNL- 364
            ..:  |...|:| |.......:|..|.:|......|:                  :.:.||..: 
 Worm   515 FKFMDPLSTQVWIMTFASYFVVSVAIWIIAKISPYEQFERDEDNGQYKPVDNQFSLRNSFWFTVC 579

  Fly   365 ELVFVGMPLLECPRSHTARLYCVMLMMYTLIIRTIYQGLLYHLIRTHQLNRWPQTIESLVQKNFT 429
            .|:..|..|  |||:.:.||...:...:.||:.:.|...|..::.|.::.               
 Worm   580 SLMQQGSEL--CPRAASTRLLTGIWWFFALILISSYTANLAAVLTTRRME--------------- 627

  Fly   430 VVLTPIVQEVLDEIPSVQHMRFRLLEANSELDPLYFLEA---NHQLRQHVTASALDIFIHFNRLS 491
               |||  |..|::.:...:::..|...|.:.  :|.|:   .::....:.:|:..:|:..::..
 Worm   628 ---TPI--ENADDLAAQTKIKYGTLGRGSTMS--FFNESKIETYERMWQLMSSSPGLFVQSSKEG 685

  Fly   492 ADKVHQRGEQGSGAHFEIVPEDII--SMQLTMYLAKHSFLIDQLN-----------EEIMWMRSV 543
            ..:|.      |..:..::...::  :::....|.:...||||..           .|::   |.
 Worm   686 IARVK------SSDYAYLMESSMLEYAVERDCELMQIGGLIDQKGYGIGLPKGSPYRELI---ST 741

  Fly   544 GLLSVWSRWELSE---------------SYLRNEQSFQVLGTMELYAIFLMVLVGLIVGLLVFIL 593
            .:|.:..:.||:|               ...:::...:.:|     .||::::|||::..::.|.
 Worm   742 AILRLQEKTELTELKEKWWKDKSVVCEQPKRKDQDDGESIG-----GIFIILVVGLVLTAVLVIF 801

  Fly   594 ELVSMR 599
            ||::.|
 Worm   802 ELITTR 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 25/110 (23%)
glr-3NP_492017.3 PBP1_iGluR_non_NMDA-like 21..385 CDD:380591 7/38 (18%)
Periplasmic_Binding_Protein_Type_2 401..761 CDD:419667 74/406 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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