DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7e and Grin3b

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:480 Identity:93/480 - (19%)
Similarity:162/480 - (33%) Gaps:147/480 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 NGSMLVEPDLFPRKLRNFFGCPLRCALWDVPPFLTLDEDQEEVLRVNGGYEGRLLLALAEKMNFT 254
            |||:       ||.||       ||..                     ||...||..|||.:.|.
Mouse   545 NGSV-------PRTLR-------RCCY---------------------GYCIDLLERLAEDLAFD 574

  Fly   255 IAVRKV----HVNMRDEALEMLRRDEVDLTLGGIRQTV-------ARGMVATSSHNYHQTREVFG 308
            ..:..|    :..:||.....|   ..||..|.....|       ||..|...:..:..|.  .|
Mouse   575 FELYIVGDGKYGALRDGRWTGL---VGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTS--LG 634

  Fly   309 VLASSYELSS-FDILFYPYRLQIWMGILGVVALSALI---------------------------- 344
            ::..:.:.:| .....:|....:|:|:...:.|:||.                            
Mouse   635 IMVRTRDTASPIGAFMWPLHWSMWVGVFAALHLTALFLTLYEWRSPYGLTPRGRNRGTVFSYSSA 699

  Fly   345 -----QLIVGRMLRERM----GSRFWLNLELVFVGMPLLECPRSHTARLYCVMLMMYTL-IIRTI 399
                 .::.||.:..:.    ..||.:||..:|..:.|    .|:||.|..||:...|. .:..|
Mouse   700 LNLCYAILFGRTVSSKTPKCPTGRFLMNLWAIFCLLVL----SSYTANLAAVMVGDKTFEELSGI 760

  Fly   400 YQGLLYHLIRTHQLNR-WPQTIESLVQKNFTVVLTPIVQEVLDEIPSVQHMRFRLLEANSELDPL 463
            :...|:|..:..:... |..:.|:.::.:|..:...:.:.   ..|:..|....|.....:|:..
Mouse   761 HDPKLHHPSQGFRFGTVWESSAEAYIKASFPEMHAHMRRH---SAPTTPHGVAMLTSDPPKLNAF 822

  Fly   464 YFLEANHQLRQHVTASALDIFIHFNRLSAD-KVHQRGE----QGSGAHFEIVPEDIISMQLTMYL 523
            .           :..|.||..:   .:.|| |:...|:    :|.|                :.|
Mouse   823 I-----------MDKSLLDYEV---SIDADCKLLTVGKPFAIEGYG----------------IGL 857

  Fly   524 AKHSFLIDQLNEEIMWMRSVGLLSVWSRWELSESYLR----NEQSFQV-----LGTMELYAIFLM 579
            .::|.|...|:|.|...:|.|.:.:     |.:.:.:    .::.|.|     :|...|..:|::
Mouse   858 PQNSPLTSNLSEFISRYKSSGFIDL-----LHDKWYKMVPCGKRVFAVTETLQMGVYHLSGLFVL 917

  Fly   580 VLVGLIVGLLVFILELVSMRSIYLR 604
            :.:||...||..:.|.|..|.:..|
Mouse   918 LCLGLGSALLTSLGEHVFYRLVLPR 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 21/105 (20%)
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 80/424 (19%)
Lig_chan 656..922 CDD:365843 53/307 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846616
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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