DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7e and gria2b

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_005157361.1 Gene:gria2b / 170451 ZFINID:ZDB-GENE-020125-4 Length:897 Species:Danio rerio


Alignment Length:571 Identity:95/571 - (16%)
Similarity:192/571 - (33%) Gaps:134/571 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 VPW-HPVPGRRHFNVIFTDSFAAFEEIRMEYYSREYNYNEHYFIFLQARDRLLQGEMRLIFDYCW 147
            ||| ..|...|....:..|....  .|:.:.|.:..||.                          
Zfish   334 VPWAQGVEIERALKQVRVDGLTG--NIQFDQYGKRVNYT-------------------------- 370

  Fly   148 RYRLIHCSIQVQKSNGDILFYSYYPFGEHGCSDMEPQLINRYNGSMLVEPDLFPRKLRNFFGCPL 212
                  .::...||||.:.. .|:               |..:..::.:.||||..........:
Zfish   371 ------VNVMELKSNGAVKI-GYW---------------NEVDKMVVTKSDLFPNDTMGLENKTV 413

  Fly   213 RCALWDVPPFLTLDEDQEEVLRVNGGYEG---RLLLALAEKMNFTIAVRKV---HVNMRDEALEM 271
            ........|::.|.:: .::...|..|||   .|...:|:...|...::.|   ....||...::
Zfish   414 IVTTILEAPYVMLKKN-ADLFMDNERYEGYCVDLAAEIAKHCGFKYQLKIVGDGKYGARDAETKI 477

  Fly   272 -------LRRDEVDLTLGGIRQTVARGMVATSSHNYHQTREVFGVLASSYELSSFDILFY--PYR 327
                   |...:.|:.:..:..|:.|..|...|..:....  ..::....:.|...:..:  |..
Zfish   478 WNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMSLG--ISIMIKKPQKSKPGVFSFLDPLA 540

  Fly   328 LQIWMGIL-GVVALSALIQLIV--------------GRMLRERMGSRF------WLNLELVFVGM 371
            .:|||.|: ..:.:|.::.|:.              |::......:.|      |.:|. .|:..
Zfish   541 YEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEYEDGQIQTNESTNEFGIFNSLWFSLG-AFMRQ 604

  Fly   372 PLLECPRSHTARLYCVMLMMYTLIIRTIYQGLLYHLIRTHQLNRWPQTIESLVQKNFTVVLTPIV 436
            .....|||.:.|:...:...:||||.:.|...|...:...::....::.|.|.::      |.|.
Zfish   605 GCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQ------TEIA 663

  Fly   437 QEVLDEIPSVQHMRFRLLEANSEL-------DPLYFL----EANHQLRQ------HVTASALDIF 484
            ...||...:.:..|...:....::       :|..|:    |...::|:      ::..|.::.:
Zfish   664 YGTLDSGSTKEFFRRSKIALFDKMWTYMKGAEPSVFVKTTAEGVMRVRKSKGKYAYLLESTMNEY 728

  Fly   485 IHFNRLSADKVHQRGEQGSGAHFEIVPEDIISMQLTMYLAKHSFLIDQLNEEIMWMRSVGLL-SV 548
            |. .|...|.:...|...|..:....|             |.|.|.:.:|..::.:...||| .:
Zfish   729 IE-QRKPCDTMKVGGNLDSKGYGIATP-------------KGSSLRNAVNLAVLKLNEQGLLDKL 779

  Fly   549 WSRW-----ELSESYLRNEQSFQVLGTMELYAIFLMVLVGLIVGLLVFILE 594
            .::|     |.......:::....|....:..:|.:::.||.:.:||.::|
Zfish   780 KNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALVE 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 18/107 (17%)
gria2bXP_005157361.1 PBP1_iGluR_AMPA_GluR2 27..395 CDD:107384 16/110 (15%)
ANF_receptor 55..377 CDD:279440 10/76 (13%)
PBP2_iGluR_AMPA 410..790 CDD:270433 67/403 (17%)
Lig_chan 542..820 CDD:278489 50/298 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591743
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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