DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7e and Grin2c

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_017169765.1 Gene:Grin2c / 14813 MGIID:95822 Length:1307 Species:Mus musculus


Alignment Length:423 Identity:89/423 - (21%)
Similarity:151/423 - (35%) Gaps:128/423 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 RVNGGYEGRLLLALAEKMNFTIAVRKVHVNMRDEALEML-----RRDEVDLTLGGIRQTVARGMV 293
            ||.|.:.|              .:.:|:....|.|:..|     |.:.:|.::..: :|....||
Mouse   548 RVRGVWNG--------------MIGEVYYKRADMAIGSLTINEERSEIIDFSVPFV-ETGISVMV 597

  Fly   294 ATSSHNYHQTREVFGVLASSYELSSFDILFYPYRLQIWMGI----LGVVALSALI---------- 344
            |.|:          |.::.|..|.       ||...:|:.:    |.|||::..:          
Mouse   598 ARSN----------GTVSPSAFLE-------PYSPAVWVMMFVMCLTVVAITVFMFEYFSPVSYN 645

  Fly   345 -QLIVGRML---RERMGSRFWLNLELVFVGMPLLECPRSHTARLYCVMLMMYTLIIRTIYQGLLY 405
             .|..|:..   ...:|...||...|||.....:|.||..|:::..::...:.:|....|...|.
Mouse   646 QNLTKGKKSGGPSFTIGKSVWLLWALVFNNSVPIENPRGTTSKIMVLVWAFFAVIFLASYTANLA 710

  Fly   406 HLIRTHQLNRWPQTIESLVQKNFTVVLTPIVQEVLDEIP------------------SVQHMRFR 452
            ..:...|   :..|:..|..|.|        |...|:.|                  :.:.|...
Mouse   711 AFMIQEQ---YIDTVSGLSDKKF--------QRPQDQYPPFRFGTVPNGSTERNIRSNYRDMHTH 764

  Fly   453 LLEAN--SELDPLYFLE--ANHQLRQHVTASALDIFIH----FNRLSA-DKVHQRGEQGSGAHFE 508
            :::.|  |..|.|..|:  |.|..|:      ||.||:    .|.::. |:..:....|||..|.
Mouse   765 MVKFNQRSVEDALTSLKMGARHVSRK------LDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFA 823

  Fly   509 IVPEDIISMQLTMY------LAKHSFLIDQLNE--EIMWMRSVGLLSVWSRWELSESYLRNEQSF 565
            ..... |:||...:      ||...||.|...:  |.:|:..:               ..||:: 
Mouse   824 TTGYG-IAMQKDSHWKRAIDLALLQFLGDGETQKLETVWLSGI---------------CHNEKN- 871

  Fly   566 QVLGTM----ELYAIFLMVLVGLIVGLLVFILE 594
            :|:.:.    .:..:|.|:||.:.:.||||..|
Mouse   872 EVMSSKLDIDNMAGVFYMLLVAMGLALLVFAWE 904

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 16/83 (19%)
Grin2cXP_017169765.1 PBP1_iGluR_NMDA_NR2 90..446 CDD:380601
PBP2_iGluR_NMDA_Nr2 462..868 CDD:270436 77/384 (20%)
NMDAR2_C 905..>980 CDD:371139 89/423 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846623
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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