DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7e and Grik3

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:655 Identity:127/655 - (19%)
Similarity:218/655 - (33%) Gaps:220/655 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 AVLHVVHHYILSV----TPSL-VLTLCCRSNHTCNFYNKMMSTLFR-EW-GLAPLQIVNVLRGV- 84
            |:|:...| |:||    .|.: |.:|.|..:....|..:.|:.:.. :| ||....:.|...|: 
Mouse   324 ALLYDAVH-IVSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLR 387

  Fly    85 -------------------PWHPVPG--------RRHFNVIFTDSFAAFEEIRMEYYSREYNYNE 122
                               .|.|..|        .|..||  |||......|.....       |
Mouse   388 TDFDLDIISLKEDGLEKVGVWSPADGLNITEVAKGRGPNV--TDSLTNRSLIVTTVL-------E 443

  Fly   123 HYFIFLQARDRLLQGEMRLIFD-YCWRYRLIHCSIQVQKSNGDILFYSY----YPFGEHGCSDME 182
            ..|:..:..||.|.|..|  |: ||         |.:.|....||.:||    ...|::|..|.:
Mouse   444 EPFVMFRKSDRTLYGNDR--FEGYC---------IDLLKELAHILGFSYEIRLVEDGKYGAQDDK 497

  Fly   183 PQLINRYNGSMLVEPDLFPRKLRNFFGCPLRCALWDVPPFLTLDEDQEEVLRVNGGYEGRLLLAL 247
            .|    :|| |:.|                           .:|...:              ||:
Mouse   498 GQ----WNG-MVKE---------------------------LIDHKAD--------------LAV 516

  Fly   248 AEKMNFTIAVRKVHVNMRDEALEMLRRDEVDLTLGGIRQTVARGMVATSSHNYHQTR-EVFGVLA 311
            |.   .||    .||  |::|::.   .:..:|||          |:......:.|. .||..| 
Mouse   517 AP---LTI----THV--REKAIDF---SKPFMTLG----------VSILYRKPNGTNPSVFSFL- 558

  Fly   312 SSYELSSFDILFYPYRLQIWMGI-LGVVALSALIQLIV---------------GRMLRER---MG 357
                        .|....|||.: |..:.:|.::.:|.               |..:.|.   :.
Mouse   559 ------------NPLSPDIWMYVLLAYLGVSCVLFVIARFSPYEWYDAHPCNPGSEVVENNFTLL 611

  Fly   358 SRFWLNL-ELVFVGMPLLECPRSHTARLYCVMLMMYTLIIRTIYQGLLYHLIRTHQLNRWPQTIE 421
            :.||..: .|:..|..|:  |::.:.|:...:...:||||.:.|...|...:...::.....:.:
Mouse   612 NSFWFGMGSLMQQGSELM--PKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSAD 674

  Fly   422 SLVQKNFTVVLTPIVQEVLDEIPSVQHMR------FRLLEANSELDPLYFLEANHQ-LRQHVTAS 479
            .|.::      |.|....:.:..::...:      |..:.|.....|...::.|.: :::.:|| 
Mouse   675 DLAKQ------TKIEYGAVKDGATMTFFKKSKISTFEKMWAFMSSKPSALVKNNEEGIQRTLTA- 732

  Fly   480 ALDIFIHFNRLSADKVHQRG-----------EQGSGAHFEIVPEDIISMQLTMYLAKHSFLIDQL 533
              |..:.....:.:.:.||.           .:|.|         |.:...:.|..|.:..|.||
Mouse   733 --DYALLMESTTIEYITQRNCNLTQIGGLIDSKGYG---------IGTPMGSPYRDKITIAILQL 786

  Fly   534 NEE----IM---WMRSVGLLSVWSRWELSESYLRNEQSFQVLGTMELYAIFLMVLVGLIVGLLVF 591
            .||    ||   |.|..|...            ...:....||..::..||:::..||::.:||.
Mouse   787 QEEDKLHIMKEKWWRGSGCPE------------EENKEASALGIQKIGGIFIVLAAGLVLSVLVA 839

  Fly   592 ILELV 596
            :.|.:
Mouse   840 VGEFI 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 18/95 (19%)
Grik3NP_001074566.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 20/93 (22%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 90/486 (19%)
Glutamate binding. /evidence=ECO:0000250 690..692 0/1 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846609
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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