DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7e and Gria2

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:439 Identity:78/439 - (17%)
Similarity:162/439 - (36%) Gaps:94/439 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 PFLTLDEDQEEVLRVNGGYEGRLLLALAE-------KMNFTI------AVRKVHVNMRDEALEML 272
            |::.:.:: .|:|..|..|||..:...||       |...||      ..|.....:.:..:..|
Mouse   425 PYVMMKKN-HEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGEL 488

  Fly   273 RRDEVDLTLGGIRQTVARGMVATSSHNYHQTREVFGVLASSYELSSFDILFY--PYRLQIWMGIL 335
            ...:.|:.:..:..|:.|..|...|..:....  ..::....:.|...:..:  |...:|||.|:
Mouse   489 VYGKADIAIAPLTITLVREEVIDFSKPFMSLG--ISIMIKKPQKSKPGVFSFLDPLAYEIWMCIV 551

  Fly   336 GVVALSALIQLIVGRML------------RERMGSR----------FWLNLELVFVGMPLLECPR 378
            ......:::..:|.|..            ||...|.          .|.:|. .|:.......||
Mouse   552 FAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLG-AFMQQGCDISPR 615

  Fly   379 SHTARLYCVMLMMYTLIIRTIYQGLLYHLIRTHQLNRWPQTIESLVQKNFTVVLTPIVQEVLDEI 443
            |.:.|:...:...:||||.:.|...|...:          |:|.:|        :||  |..:::
Mouse   616 SLSGRIVGGVWWFFTLIIISSYTANLAAFL----------TVERMV--------SPI--ESAEDL 660

  Fly   444 PSVQHMRFRLLEANSELDPLYFLEAN----HQLRQHVTASALDIFIHFNRLSADKVHQ-RGEQGS 503
            .....:.:..|::.|..:  :|..:.    .::..::.::...:|:   |.:|:.|.: |..:|.
Mouse   661 SKQTEIAYGTLDSGSTKE--FFRRSKIAVFDKMWTYMRSAEPSVFV---RTTAEGVARVRKSKGK 720

  Fly   504 GAH-FEIVPEDIISMQL---TMYLA-------------KHSFLIDQLNEEIMWMRSVGLL-SVWS 550
            .|: .|....:.|..:.   ||.:.             |.|.|...:|..::.:...|:| .:.:
Mouse   721 YAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKN 785

  Fly   551 RW-----ELSESYLRNEQSFQVLGTMELYAIFLMVLVGLIVGLLVFILE 594
            :|     |.......:::....|....:..:|.:::.||.:.:||.::|
Mouse   786 KWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 19/104 (18%)
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612
PBP2_iGluR_AMPA 413..794 CDD:270433 70/397 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846637
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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