DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7e and grin2b

DIOPT Version :9

Sequence 1:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:412 Identity:73/412 - (17%)
Similarity:145/412 - (35%) Gaps:112/412 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 RVNGGYEGRLLLALAEKMNFTIAVRKVHVNMRDEALEMLRRDEVDLTLGGIRQTVARGMVATSSH 298
            ::||.:.|         |...:..::.::.:....:...|.:.||.::..| :|....||:.|: 
 Frog   486 KINGTWNG---------MIGEVVTKRAYMAVGSLTINEERSEVVDFSVPFI-ETGISVMVSRSN- 539

  Fly   299 NYHQTREVFGVLASSYELSSFDILFYPYRLQIWMGILGVVALSALIQLIV---------GRMLRE 354
                     |.::.|..|.       |:...:|:.:..::.:.:.:.:.|         .|.|.:
 Frog   540 ---------GTVSPSAFLE-------PFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLAD 588

  Fly   355 ---------RMGSRFWLNLELVFVGMPLLECPRSHTARLYCVMLMMYTLIIRTIY-QGLLYHLIR 409
                     .:|...||...|||.....::.|:..|:::...:...:.:|....| ..|...:|:
 Frog   589 GREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQ 653

  Fly   410 THQLNRWPQTIESLVQKNFTVVLTPIVQEVLDEIPSV-----------QHMRFRLLEANSELDPL 463
            ...:::    :..|..|.|        |...|..|:.           :::|...||.:|     
 Frog   654 EEYVDQ----VSGLSDKKF--------QRPNDFSPAFRFGTVPNGSTERNIRNNYLEMHS----- 701

  Fly   464 YFLEANHQLRQHVTAS----ALDIFIH----FNRLSA-DKVHQRGEQGSGAHFEIVPEDIISMQL 519
            |.::.|.:..|....|    .||.||:    .|.::. |:..:....|||..|......|     
 Frog   702 YMVKFNQRSVQDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFATTGYGI----- 761

  Fly   520 TMYLAKHSFLIDQLNEEIMWMRSVGL--LSVWSRWELSESYL----------RNEQSFQVLGTME 572
                        .:.::..|.|.|.|  |.::...|:.|...          :||.....|....
 Frog   762 ------------AIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHNEKNEVMSSQLDIDN 814

  Fly   573 LYAIFLMVLVGLIVGLLVFILE 594
            :..:|.|:...:.:.|:.||:|
 Frog   815 MAGVFYMLAAAMALSLITFIME 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 13/78 (17%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 64/374 (17%)
NMDAR2_C 837..1449 CDD:402274 73/412 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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