DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7d and Grid2

DIOPT Version :9

Sequence 1:NP_001138175.1 Gene:Ir7d / 7354416 FlyBaseID:FBgn0259190 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_077355.2 Gene:Grid2 / 79220 RGDID:68368 Length:1007 Species:Rattus norvegicus


Alignment Length:489 Identity:96/489 - (19%)
Similarity:182/489 - (37%) Gaps:120/489 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 DGDLWDVFPRRLK-NLHGCPLSVIVWDIPPYMRINWK-----------SSDPMDGLDGLDGLLLR 245
            :|.|.|   ::|: |:.|..|.|:.....|::.::..           |.|.:|.|....|    
  Rat   426 NGSLTD---KKLENNMRGVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLG---- 483

  Fly   246 IVARKMNFTLKLIPNEPNGLIGGSSFMNGTFTGAYKMLRERRANITIGCAACTPERSTFLEATSP 310
                 .|:.:.:.|:...    ||...:||:.|....|..:||:|.|.....||:|...::.|:.
  Rat   484 -----FNYEIYVAPDHKY----GSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTR 539

  Fly   311 YSQMSYIIVLQARGGYSIYEVM--LFPFEKYTWLLLS-TIL--G-----LHWIVGSRWRMPS--- 362
            |  |.|.:.:..|......::.  |.||:...|..:: |:|  |     |:|:...|.:|.|   
  Rat   540 Y--MDYSVGVLLRRAEKTVDMFACLAPFDLSLWACIAGTVLLVGLLVYLLNWLNPPRLQMGSMTS 602

  Fly   363 -----------------------------PILAGWMLWIFVIRASYEASVFNFIQNSPVKPSPRT 398
                                         .::..|.|:..::.:||.|::..|:..:.::.|.::
  Rat   603 TTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLTITRIESSIQS 667

  Fly   399 LDQALSG----GFRFITDHASYR-MTLK-IPSFQGKTLISA---------GQPVDVFDALLKAPW 448
            | |.||.    .:..:.|.|.|: :.:| :..|:..::.|.         |...:|.::  :|..
  Rat   668 L-QDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLES--QAGI 729

  Fly   449 KTGAFTSRAFLADHLVRHRKHRN----QLVILAEKIVDNMLCMYFPHGSYFAWEINKLLFNMRSF 509
            :...:.:.||:.|..|......|    ....:...:.|....:...|||.:....::.:..::..
  Rat   730 QKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQS 794

  Fly   510 G---IFQHHSQILAWDNLPTTTDTDTPGKRIHSSTESVATGFAESMSFVVAALNCLMGALCISIV 571
            |   |.:|     .|  .|.....|     ::||.::...|.|..:..:......|...:.:|.:
  Rat   795 GDMDILKH-----KW--WPKNGQCD-----LYSSVDAKQKGGALDIKSLAGVFCILAAGIVLSCL 847

  Fly   572 VFGLELLSRRRHWT-----------GLEWLFERV 594
            :..||....||..:           .||.|..||
  Rat   848 IAVLETWWSRRKGSRVPSKEDDKEIDLEHLHRRV 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7dNP_001138175.1 None
Grid2NP_077355.2 Interaction with CBLN1 homotrimer. /evidence=ECO:0000250|UniProtKB:O43424 24..345
Periplasmic_Binding_Protein_type1 28..429 CDD:415822 1/2 (50%)
PBP2_iGluR_delta_2 440..806 CDD:270449 74/390 (19%)
Interaction with AP4M1. /evidence=ECO:0000269|PubMed:14572453 921..991
PDZ-binding. /evidence=ECO:0000250 1005..1007
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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