DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7d and grik4

DIOPT Version :9

Sequence 1:NP_001138175.1 Gene:Ir7d / 7354416 FlyBaseID:FBgn0259190 Length:594 Species:Drosophila melanogaster
Sequence 2:XP_021322087.1 Gene:grik4 / 556582 ZFINID:ZDB-GENE-070821-5 Length:965 Species:Danio rerio


Alignment Length:445 Identity:86/445 - (19%)
Similarity:154/445 - (34%) Gaps:110/445 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 PY--MRINWKSSDPMDGLDGLDGLLLRIVA--RKMNFTLKLIPNEPNGLIGGSSFMNGTFTGAYK 281
            ||  :|.|.:..:..|..:|....:|:.:|  .|..:.::|:.:...|:.|.    |||:||...
Zfish   427 PYVMLRANHQELEGNDRYEGFCVDMLKELADILKFKYRIRLVGDGVYGVPGA----NGTWTGMVG 487

  Fly   282 MLRERRANITIGCAACTPERSTFLEATSPYSQMS----YIIVLQARGGYSIYEVMLFPFEKYTWL 342
            .|..|:|::.:.....|.||...::.:.|:..:.    |.:.:..|.||..:   |.||....||
Zfish   488 ELISRKADLAVAALTITAEREKVIDFSKPFMTLGISIMYRVHIGRRPGYFSF---LDPFSPGVWL 549

  Fly   343 LL-------STILGL-HWIVGSRWRMPSPILAG-------------------------------- 367
            .:       |.:|.| ..:....|..|.|.|.|                                
Zfish   550 FMLLAYLAVSCVLFLVARLTPYEWYNPHPCLKGRCSLLINQYSLGNSFWFPVGGFMQQGSTIAPR 614

  Fly   368 ----------WMLWIFVIRASYEASVFNFI----QNSPVKPSPRTLDQALSGGFRFITDHASYRM 418
                      |..:..:|.:||.|::..|:    ...|::......||.   ...:.|.|....|
Zfish   615 ALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESVDDLADQT---AIEYGTMHGGSTM 676

  Fly   419 TLKIPSFQGK---------TLISAGQPVDVFDALLKAPWKTGAFTSRAFLADHLVR--HRKHRNQ 472
            |.    ||..         ..:.:.|| .||....:........::.|:|.:..:.  :|:....
Zfish   677 TF----FQNSRYQTYQRMWNFMYSKQP-SVFVKSTEEGIARVLNSNYAYLLESTMNEYYRQRNCN 736

  Fly   473 LVILAEKIVDNMLCMYFPHGSYFAWEINKLLFNMRSFGIFQHHSQILA---WDNLPTTTDTDTPG 534
            |..:...:......:..|.||.:..|.:..:..::.    ::..:||.   ||           |
Zfish   737 LTQIGGLLDTKGYGIGMPLGSVYRDEFDLAILRLQE----ENRLEILKRKWWD-----------G 786

  Fly   535 KRIHSSTESVATGFA-ESMSFVVAALNCLMGALCISIVVFGLELLSRRRHWTGLE 588
            .:.....:..|.|.. |::..:...|.|   .|.::|.:..||.:...||..|.|
Zfish   787 GKCPKEEDHRAKGLGMENIGGIFVVLVC---GLLVAIFMAVLEFVWMLRHTPGTE 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7dNP_001138175.1 None
grik4XP_021322087.1 Periplasmic_Binding_Protein_Type_1 26..400 CDD:324556
PBP2_iGluR_kainate_KA1 425..785 CDD:270442 70/376 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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