DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7d and Gria3

DIOPT Version :9

Sequence 1:NP_001138175.1 Gene:Ir7d / 7354416 FlyBaseID:FBgn0259190 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_001268858.2 Gene:Gria3 / 53623 MGIID:95810 Length:888 Species:Mus musculus


Alignment Length:464 Identity:83/464 - (17%)
Similarity:149/464 - (32%) Gaps:166/464 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 IVWDIPPYMRINWKSSDPMDGLDGLDGLLLRIVARKMNFTLKLIPNEP-----NGLIGGSSFMNG 274
            :.::|..::||.:|.|...||..|         ||           :|     ||::|  ..:.|
Mouse   452 LAYEIAKHVRIKYKLSIVGDGKYG---------AR-----------DPETKIWNGMVG--ELVYG 494

  Fly   275 TFTGAYKMLRERRANITIGCAACTPERSTFLEATSPYSQMSYIIVL----QARGG---------Y 326
                        ||:|.:.....|..|...::.:.|:..:...|::    :::.|         |
Mouse   495 ------------RADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAY 547

  Fly   327 SIYEVMLFPF--EKYTWLLLSTILGLHW-----------------------IVGSRW-------- 358
            .|:..::|.:  ......|:|......|                       |..|.|        
Mouse   548 EIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQ 612

  Fly   359 -------RMPSPILAGWMLWIF--VIRASYEASVFNFI----QNSPVKPSP----------RTLD 400
                   |..|..:.|.:.|.|  :|.:||.|::..|:    ..||::.:.          .|||
Mouse   613 QGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLD 677

  Fly   401 QALSGGFRFITDHASYRMTLKIPSFQGKTLISAGQPVDVFDALLKAPWKTGAFTSRAFLADHLVR 465
               ||..:.....:...:..|:.|:     :.:.:|              ..||...  ||.:.|
Mouse   678 ---SGSTKEFFRRSKIAVYEKMWSY-----MKSAEP--------------SVFTKTT--ADGVAR 718

  Fly   466 HRKHRNQLVILAEKIVDNML-----C---------------MYFPHGSYFAWEINKLLFNMRSFG 510
            .||.:.:...|.|..::..:     |               :..|.||.....:|..:..:...|
Mouse   719 VRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRTPVNLAVLKLSEQG 783

  Fly   511 IFQHHSQILAWDNLPTT--TDTDTPGKRIHSSTESVATGFAESMSFVVAALNCLMGALCISIVVF 573
            |.         |.|...  .|....|.:...|.:..:   |.|:|.|......|:|.|.::::|.
Mouse   784 IL---------DKLKNKWWYDKGECGAKDSGSKDKTS---ALSLSNVAGVFYILVGGLGLAMMVA 836

  Fly   574 GLELLSRRR 582
            .:|...:.|
Mouse   837 LIEFCYKSR 845

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir7dNP_001138175.1 None
Gria3NP_001268858.2 PBP1_iGluR_AMPA_GluR3 29..403 CDD:380610
PBP2_iGluR_AMPA 416..799 CDD:270433 71/413 (17%)
Glutamate binding 502..504 0/1 (0%)