DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7d and gria3b

DIOPT Version :9

Sequence 1:NP_001138175.1 Gene:Ir7d / 7354416 FlyBaseID:FBgn0259190 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_938174.1 Gene:gria3b / 368416 ZFINID:ZDB-GENE-030616-53 Length:883 Species:Danio rerio


Alignment Length:694 Identity:116/694 - (16%)
Similarity:207/694 - (29%) Gaps:248/694 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 TLQKIFINGLAVYNFGVFISTSYEEMDRDRVILVHQVLNR--NLYPPNFPVAVVLASKMNRKITA 100
            :|.|:|:.|..:..|.:.         ....::|.|.|.|  .|....||.|         |.|.
Zfish   246 SLDKVFLGGANISGFQII---------NPENLVVQQFLQRWDRLDEREFPEA---------KNTP 292

  Fly   101 QVFTQLLFVQNAEQAIAIAEGVNRNGLCVIVLLTSQPERPIMTKIFTYFMQERYNINVVILVPRL 165
            ..:|..|   :.:..:.|||.                        |.|..::|.:::      |.
Zfish   293 LKYTSAL---SYDAILVIAEA------------------------FRYLRRQRVDVS------RR 324

  Fly   166 HGVQAFNVRPYTPTSCS-----SLEPVEIDIKDGDL-WDVFPRR---------LKNLHGCPLSVI 215
            .........|..|.|..     :|:.|::....|:: :|.|.||         :|.  |.|..:.
Zfish   325 GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDSFGRRTNYTIDVYEMKT--GGPRKIG 387

  Fly   216 VWD-------------------------------IPPYMRINWKSSDPMDGLDGLDGLLLRIVAR 249
            .|:                               ..||:... |:...::|.:..:|..:.:.:.
Zfish   388 YWNEFERFVNIMDQQFTNDSSSVENRTIVVTTIMEAPYVMYK-KNHMHLEGNEKYEGYCVDLASE 451

  Fly   250 -----KMNFTLKLIPNEPNGLIGGSSFMNGTFTGAYKMLRERRANITIGCAACTPERSTFLEATS 309
                 .:.:.|.::   .:|..|.......::.|....|...||:|.:.....|..|...::.:.
Zfish   452 IAKHVGIKYRLSIV---MDGKYGARDPETKSWNGMVGELVYGRADIAVAPLTITLVREEVIDFSK 513

  Fly   310 PYSQMSYIIVL----QARGG---------YSIYEVMLFP-------------FEKYTWLLLST-- 346
            |:..:...|::    :::.|         |.|:..::|.             |..|.|.|..|  
Zfish   514 PFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWQLDETDE 578

  Fly   347 ------------ILGLHWIVGSRW---------------RMPSPILAGWMLWIF--VIRASYEAS 382
                        ..|   |..|.|               |..|..:.|.:.|.|  :|.:||.|:
Zfish   579 VKDPQTPPDPPNDFG---IFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTAN 640

  Fly   383 VFNFI----QNSPVKPSP----------RTLDQALSGGFRFITDHASYR-----MTLKIPSFQGK 428
            :..|:    ..||::.:.          .|||...:..|...:..|.|.     |....||...|
Zfish   641 LAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFAK 705

  Fly   429 TLISAGQPVDVFDALLKAPWKTGAFTSRAFLADHLVRHRKHRNQLVILAEKIVDNML-----C-- 486
            |                             ..|.:.|.||.:.:...|.|..::..:     |  
Zfish   706 T-----------------------------TPDGVARVRKSKGKFAFLLESTMNEYIEQRKPCDT 741

  Fly   487 -------------MYFPHGSYFAWEINKLLFNMRSFGIFQHHSQILAWDNLPTTTDTDTPGKRIH 538
                         :..|.||.....:|..:..:...|:.........:|.          |:...
Zfish   742 MKVGGNLDSKGYGVATPKGSALRNAVNLAVLKLNEQGLLDKLKNKWWYDK----------GECGS 796

  Fly   539 SSTESVATGFAESMSFVVAALNCLMGALCISIVVFGLELLSRRR 582
            ...:|.....|.|:|.|......|:|.|.::::|..:|...:.|
Zfish   797 GGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIEFCYKSR 840

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7dNP_001138175.1 None
gria3bNP_938174.1 Periplasmic_Binding_Protein_Type_1 25..396 CDD:299141 38/202 (19%)
ANF_receptor 36..379 CDD:279440 34/183 (19%)
PBP2_iGluR_AMPA 412..794 CDD:270433 67/427 (16%)
Lig_chan 544..824 CDD:278489 55/321 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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