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Protein Alignment Ir7d and Gria3

DIOPT Version :9

Sequence 1:	NP_001138175.1	Gene:	Ir7d / 7354416	FlyBaseID:	FBgn0259190	Length:	594	Species:	Drosophila melanogaster
Sequence 2:	NP_001106213.1	Gene:	Gria3 / 29628	RGDID:	70958	Length:	888	Species:	Rattus norvegicus

Alignment Length:	462	Identity:	80/462 - (17%)
Similarity:	147/462 - (31%)	Gaps:	162/462 - (35%)

- Green bases have known domain annotations that are detailed below.

  Fly   215 IVWDIPPYMRINWKSSDPMDGLDGLDGLLLRIVARKMNFTLKLIPNEP-----NGLIGGSSFMNG 274
            :.::|..::||.:|.|...||..|         ||           :|     ||::|  ..:.|
  Rat   452 LAYEIAKHVRIKYKLSIVGDGKYG---------AR-----------DPETKIWNGMVG--ELVYG 494

  Fly   275 TFTGAYKMLRERRANITIGCAACTPERSTFLEATSPYSQMSYIIVL----QARGG---------Y 326
                        ||:|.:.....|..|...::.:.|:..:...|::    :::.|         |
  Rat   495 ------------RADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAY 547

  Fly   327 SIYEVMLFPF--EKYTWLLLSTILGLHW-----------------------IVGSRW-------- 358
            .|:..::|.:  ......|:|......|                       |..|.|
  Rat   548 EIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQ 612

  Fly   359 -------RMPSPILAGWMLWIF--VIRASYEASVFNFI----QNSPVKPSP----------RTLD 400
                   |..|..:.|.:.|.|  :|.:||.|::..|:    ..||::.:.          .|||
  Rat   613 QGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLD 677

  Fly   401 QALSGGFRFITDHASYRMTLKIPSFQGKTLISAGQPVDVFDALLKAPWKTGAFTSRAFLADHLVR 465
               ||..:.....:...:..|:.|:     :.:.:|              ..||...  ||.:.|
  Rat   678 ---SGSTKEFFRRSKIAVYEKMWSY-----MKSAEP--------------SVFTKTT--ADGVAR 718

  Fly   466 HRKHRNQLVILAEKIVDNML-----C---------------MYFPHGSYFAWEINKLLFNMRSFG 510
            .||.:.:...|.|..::..:     |               :..|.||.....:|..:..:...|
  Rat   719 VRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQG 783

  Fly   511 IFQHHSQILAWDNLPTTTDTDTPGKRIHSSTESVATGFAESMSFVVAALNCLMGALCISIVVFGL 575
            :.........:|.          |:......:|.....|.|:|.|......|:|.|.::::|..:
  Rat   784 LLDKLKNKWWYDK----------GECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMVALI 838

  Fly   576 ELLSRRR 582
            |...:.|
  Rat   839 EFCYKSR 845

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.