DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7d and glr-6

DIOPT Version :9

Sequence 1:NP_001138175.1 Gene:Ir7d / 7354416 FlyBaseID:FBgn0259190 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_741822.2 Gene:glr-6 / 180955 WormBaseID:WBGene00001617 Length:844 Species:Caenorhabditis elegans


Alignment Length:436 Identity:82/436 - (18%)
Similarity:151/436 - (34%) Gaps:110/436 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 RRLK--NLHGCPLSVIVWDIPPYMRINWKSSDPMDGLDGLDGLLLRIVARKMNFTLKLIPNEPNG 264
            |.||  ::|..|  .::..|.|..||..:.. .:|.||.|..:|      ..|:|||::.:...|
 Worm   409 RTLKVTSIHEKP--YVIEKIMPDGRIKHEGF-CVDLLDKLAEML------HFNYTLKIVKDNKYG 464

  Fly   265 LIGGSSFMNGT--FTGAYKMLRERRANITIGCAACTPERSTFLEATSPYSQMSYIIVLQARGGYS 327
                 ...|||  :.|....:....|::.:.....|..|...::.|.|:.|:...::::.....|
 Worm   465 -----ERKNGTDEWDGMIGEILRGDADMAVAPITVTATRLEVIDFTDPFLQLGISMLMRQPNPKS 524

  Fly   328 IYEV--MLFPFEKYTW----------LLLSTILGL---------HWIVGSRWRMPSPIL------ 365
            ...:  .|:|.....|          .||.|:..:         ..|..|.|.:...:|      
 Worm   525 SSSLTRFLWPLSASVWTFSAIATVITALLVTVAAVLSPKESTAEFKIQNSVWYLVCILLRAGSGY 589

  Fly   366 -----------AGWMLWIFVIRASYEASVFNFI-------QNSPVKPSPRTLDQ------ALSGG 406
                       |.|..:..|:.|.|.|   ||.       ::.|........:|      ::.||
 Worm   590 NCQAGATRLISAVWWSFTLVLIAQYTA---NFAALLTVDRKSMPFNSFEELGNQTEYNFGSILGG 651

  Fly   407 -----FRFITDHASYRMTLKIPSFQGKTLISAGQPVDVFDALLKAPWKTGAFTSRAFLADHLVRH 466
                 |::.......|:..::.|.:....:  |...:..:.:|...:   .|...:...|:.|..
 Worm   652 STMQFFKYSRIETFRRLWERMQSAEPSAFV--GTNHEGVNRVLNEKY---VFLMESATLDYQVTQ 711

  Fly   467 RKHRNQL--VILAEKIVDNMLCMYFPHGSYFAWEINKLLFNMRSFGIFQHHSQILA-----WDNL 524
            ..:..::  |:|.    .|...:..|.||.:..::.:.:.::...||      ||.     |...
 Worm   712 NCNLTRVGNVVLG----SNGYSIALPKGSKWREKLTRQILDLNEKGI------ILMLKNNWWKKS 766

  Fly   525 PTTTDTDTPGKRIHSSTESVATGF-AESM--SFVVAALNCLMGALC 567
            .....:..|        |.:.|.. ||::  .|::.||...:|.||
 Worm   767 QQECQSSEP--------EDLQTALGAENVYGLFLLLALGSGIGVLC 804

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7dNP_001138175.1 None
glr-6NP_741822.2 PBP1_iGluR_non_NMDA-like 21..394 CDD:380591
PBP2_iGluR_Kainate 409..764 CDD:270432 70/386 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167554
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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