DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7d and Grin2b

DIOPT Version :9

Sequence 1:NP_001138175.1 Gene:Ir7d / 7354416 FlyBaseID:FBgn0259190 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_001350679.1 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:490 Identity:89/490 - (18%)
Similarity:159/490 - (32%) Gaps:176/490 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 TLQKIFINGLAVYNFGVFISTSYEEMD-------RDRVILV----HQVLNRNLYPPNFPVA---- 87
            |:...|..||        ||.||:|.|       ||.:.::    ..:|:.:.:.|. |.:    
Mouse   268 TVPSEFPTGL--------ISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPE-PKSSCYN 323

  Fly    88 -----VVLASKMNRKITAQVF--TQLLFVQNAEQAIAIAEGVNRNGLCVIVLLTSQPERPIMTKI 145
                 :..::.:||.:....|  ..|.|.:         :|...:...||:||..:.:...:.|.
Mouse   324 THEKRIYQSNMLNRYLINVTFEGRNLSFSE---------DGYQMHPKLVIILLNKERKWERVGKW 379

  Fly   146 FTYFMQERYNINVVILVPRLHGVQAFNVRPYTPTSCSSLEPVEIDIKDGDLWDVFPRRLKNLHGC 210
            ....:|.:|.:                    .|..|...|..|.|                 |  
Mouse   380 KDKSLQMKYYV--------------------WPRMCPETEEQEDD-----------------H-- 405

  Fly   211 PLSVIVWDIPPYMRINWKSSDPMDG------------------LDGLDGL-----------LLRI 246
             ||::..:..|::.:  :|.||:.|                  .|...|.           :|:.
Mouse   406 -LSIVTLEEAPFVIV--ESVDPLSGTCMRNTVPCQKRIISENKTDEEPGYIKKCCKGFCIDILKK 467

  Fly   247 VARKMNFT--LKLIPNEPNGLIGGSSFMNGTFTGAYKMLRERRANITIGCAACTPERSTFLEATS 309
            :::.:.||  |.|:.|..:|     ..:|||:.|....:..:||.:.:|......|||..::.:.
Mouse   468 ISKSVKFTYDLYLVTNGKHG-----KKINGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSV 527

  Fly   310 PYSQMSYIIVLQARGGYSIYEVMLFPFEKYTWLLLSTILGLHWIVGSRWRMPSPILAGWMLWIFV 374
            |:.:....:::....|.......|.||....|:::..:|                        .:
Mouse   528 PFIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVML------------------------LI 568

  Fly   375 IRASYEASVFNFIQNSPVKPSPRTLDQALSGGFRFITDHASYRMTLKIPSFQ-GKTL-------- 430
            :.|   .:||.|...|||..:....|....||                |||. ||.:        
Mouse   569 VSA---VAVFVFEYFSPVGYNRCLADGREPGG----------------PSFTIGKAIWLLWGLVF 614

  Fly   431 ---ISAGQPVDVFDALLKAPWKTGAFTSRAFLADH 462
               :....|......::.:.|   ||.:..|||.:
Mouse   615 NNSVPVQNPKGTTSKIMVSVW---AFFAVIFLASY 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7dNP_001138175.1 None
Grin2bNP_001350679.1 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601 27/137 (20%)
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 57/317 (18%)
NMDAR2_C 840..1482 CDD:402274
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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