DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7d and Grik5

DIOPT Version :9

Sequence 1:NP_001138175.1 Gene:Ir7d / 7354416 FlyBaseID:FBgn0259190 Length:594 Species:Drosophila melanogaster
Sequence 2:XP_030098003.1 Gene:Grik5 / 14809 MGIID:95818 Length:1003 Species:Mus musculus


Alignment Length:697 Identity:133/697 - (19%)
Similarity:233/697 - (33%) Gaps:219/697 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 EEMDRDRVILV---------HQVLNRNL-------YPPNFPV---AVVLASKMNRKITAQVFTQL 106
            :|:..|:|..:         |.||..:|       :|.:.|:   .|:.||::.  :|:..:..:
Mouse   204 KEIRDDKVSTIIIDANASISHLVLRLSLNLSSPLGFPRSLPLGLSCVLQASELG--MTSAFYKYI 266

  Fly   107 LFVQNAEQAIAIAEGV---NRNGLCVIVLLTSQPERPIMTKIFTYFMQERYNIN----------- 157
            |  ...:..|...:|:   :.|.|...:..||.|..|...:......:|....:           
Mouse   267 L--TTMDFPILHLDGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAAL 329

  Fly   158 -------VVILVPRLHGVQAFNVRPYTPTSC----------SSLEPVEIDIKDG----------- 194
                   ||..|..|:..|...|:|...||.          :.|..||.|...|           
Mouse   330 MFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRT 394

  Fly   195 -----------------DLWDVFPRRLKNLHGCPLSV-----------IVWDI--PPYM--RINW 227
                             .:|  :..|...::...|.:           :|..|  .||:  |.|:
Mouse   395 NYTLRILEKSRQGHREIGVW--YSNRTLAMNATTLDINLSQTLANKTLVVTTILENPYVMRRPNF 457

  Fly   228 KSSDPMDGLDGLDGLLLRIVARKMNFTLKLIPNEPNGLIGGSSFMNGTFTGAY-KMLRERRANIT 291
            ::....:..:|....:||.:|..:.|..:|...| :||.|... .||::||.. :::..::|::.
Mouse   458 QALSGNERFEGFCVDMLRELAELLRFRYRLRLVE-DGLYGAPE-PNGSWTGMVGELINRQKADLA 520

  Fly   292 IGCAACTPERSTFLEATSPYSQMS----YIIVLQARGGYSIYEVMLFPFEKYTWLLL-------S 345
            :.....|.||...::.:.|:..:.    |.:.:..:.||..:   |.||....||.:       |
Mouse   521 VAAFTITAEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSF---LDPFSPAVWLFMLLAYLAVS 582

  Fly   346 TILGLHWIVGSR-----WRMPSPILAG-------------------------------------- 367
            .:|    .:.:|     |..|.|.|..                                      
Mouse   583 CVL----FLAARLSPYEWYNPHPCLRARPHILENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRC 643

  Fly   368 ----WMLWIFVIRASYEASVFNFI----QNSPVKPSPRTLDQALSGGFRFITDHASYRMTLKIPS 424
                |..:..:|.:||.|::..|:    ...||:.:....||.   ...:.|.||...||.    
Mouse   644 VSGVWWAFTLIIISSYTANLAAFLTVQRMEVPVESADDLADQT---NIEYGTIHAGSTMTF---- 701

  Fly   425 FQGK---------TLISAGQPVDVFDALLKAPWK--TGAFTSR-AFLADHLVR--HRKHRNQLVI 475
            ||..         ..:.:.|| .||   :|:..:  .....|| |||.:..:.  ||:....|..
Mouse   702 FQNSRYQTYQRMWNYMQSKQP-SVF---VKSTEEGIARVLNSRYAFLLESTMNEYHRRLNCNLTQ 762

  Fly   476 LAEKIVDNMLCMYFPHGSYFAWEINKLLFNMRSFGIFQHHSQILA---WDNLPTTTDTDTPGKRI 537
            :...:......:..|.||.|..||...:..::.    .:..:||.   |:           |.|.
Mouse   763 IGGLLDTKGYGIGMPLGSPFRDEITLAILQLQE----NNRLEILKRKWWE-----------GGRC 812

  Fly   538 HSSTESVATGFA-ESMSFVVAALNCLMGALCISIVVFGLELL-SRRR 582
            ....:..|.|.. |::..:...|.|   .|.|::.|..:|.: |.||
Mouse   813 PKEEDHRAKGLGMENIGGIFVVLIC---GLIIAVFVAVMEFIWSTRR 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7dNP_001138175.1 None
Grik5XP_030098003.1 PBP1_iGluR_Kainate_KA1_2 23..424 CDD:380616 39/225 (17%)
Periplasmic_Binding_Protein_Type_2 437..808 CDD:419667 78/394 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.