DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir94d and grin3a

DIOPT Version :9

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:XP_009303361.1 Gene:grin3a / 564832 ZFINID:ZDB-GENE-130530-780 Length:1111 Species:Danio rerio


Alignment Length:619 Identity:111/619 - (17%)
Similarity:194/619 - (31%) Gaps:232/619 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SFYHSLIHHL-------------NRE--LKIEYVLLLGNFDTTWLDILWQLPV-SVLQIKEHSRE 68
            ||..|:.|.:             ||:  :|:|::.           ...|:|| ||:| .|..|:
Zfish   184 SFLQSVCHTVIVQGVSAIISFPQNRDELVKLEFIA-----------STLQIPVISVVQ-SEFQRQ 236

  Fly    69 TYSLL------ENPSHNVLTIAFVNDSPEDILEILYRNLRMLNTQPVLLVIRKST---------I 118
            |.:||      :||..:...:.|...|..:..::.....:.:|....:.::..::         |
Zfish   237 TQNLLHFQMAMQNPQTSQANLIFSLLSMNNWFDVSLVMCQQMNISDFVFLLHNNSKFHLGTVLKI 301

  Fly   119 RVNSLLEWCWHHQLLKVVAIAQDFMESLIVYSYNPFPVLQFIER-----------------RLDN 166
            ..||..:..:|..|...:...:|...:|:.:..:    ::.|.|                 .:.:
Zfish   302 STNSSSKNDFHIFLQAQLESIKDSTSTLVTFGCD----IRDIRRIFTTIAKFGLILPDYHWIIGD 362

  Fly   167 STVIFEKRLENL------HGYE---------------VPIALGGS---SPRLIV-------YRDL 200
            |..:.|.|.|.|      ||..               |..|:|.:   ||:|.:       ...|
Zfish   363 SQNVEELRTEGLPMGLLAHGRMGEPSLDHYVQDALELVARAVGSAATVSPQLALIPGTTNCLARL 427

  Fly   201 EGKLIFSGP-VGNFM--KSFEQRYNCRLVQPYPFDESAI-----------------SPARDLIAS 245
            |.|.:.||. :..:|  .||:....|..||    :||.|                 .|....:.|
Zfish   428 EAKNLTSGTFLSRYMASTSFDGLSGCISVQ----EESTIISESHHFIWNLQHDPIGKPMWTRLGS 488

  Fly   246 VQNGSVQIALGAIYP----QVPYTGYSYPIELMSWCLMMPVPEEVPHSQLYSMVFSPMAF----- 301
            .::|.|.:..| ::|    ..|...:.:...|              |.::.::|..|..|     
Zfish   489 WKHGKVVMDYG-VWPNKRRSQPGADWRHSSRL--------------HLRVVTLVEHPFVFTRDVD 538

  Fly   302 --GITIVAMVLIS-LTLSMALR---------------------LHGYRV------------SFSE 330
              |:.....:.:. ||...||.                     .:||.:            .|..
Zfish   539 DEGLCPAGQLCLDPLTNDTALLESLFQGLQGANDTVPLEFKKCCYGYCIDLLEKLAEDMGFDFDL 603

  Fly   331 YFLHDSCLRGVLSQSFYEVLRAPALIKAMYLVICLLGL-----LITSWYNSYFSTFV-------- 382
            |.:.|. ..|......:..|....:..|.:|.:....:     .:..:.:.:|||.:        
Zfish   604 YIVGDG-KYGAYKNGRWTGLVGDLMSGAAHLAVTSFSINSARSQVIDFTSPFFSTSLGILVRTRD 667

  Fly   383 TSAPRFPQLTSYESIRHSNIKIVIWKPEYEMLL--FFSENMEKYSSIFQLQEDYKEFLHLRDSFD 445
            |:||               |...:|...:.|.|  |.|                   ||:...|.
Zfish   668 TAAP---------------IGAFMWPLHWSMWLGIFVS-------------------LHVTAVFL 698

  Fly   446 TRYGYMMPMEKWSLMKEQQRVFSSPLFSLQDDLC 479
            |.|.:..|.......:.:.||||   ||...::|
Zfish   699 TLYEWKSPFGMTPRGRNRDRVFS---FSSALNVC 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
grin3aXP_009303361.1 Periplasmic_Binding_Protein_Type_1 36..502 CDD:299141 65/338 (19%)
ANF_receptor 132..452 CDD:279440 54/283 (19%)
PBP2_iGluR_NMDA_Nr3 518..908 CDD:270438 44/264 (17%)
Lig_chan 682..941 CDD:278489 17/70 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591824
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.