DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir94d and grid1b

DIOPT Version :9

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:XP_009304811.1 Gene:grid1b / 557511 ZFINID:ZDB-GENE-121214-84 Length:1048 Species:Danio rerio


Alignment Length:735 Identity:137/735 - (18%)
Similarity:248/735 - (33%) Gaps:248/735 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 ALVLLSP-GGDSFYHSLIH-----------HLNRELKIEYVLLLGNFDTTWLDILWQL-PV---S 58
            |::|||| |...|.|..:.           .:|.|:....:|.|.:.....:.::.|: |:   |
Zfish   227 AILLLSPRGAQVFIHQAVETNLASKDSHWVFVNEEISDTEILELAHSSLGRMTVVRQIFPLWRDS 291

  Fly    59 VLQIKEHSRETYSLLENPSHNVL-----TIAFVNDSPEDILEILYRNL--RMLNTQPVLLVIRKS 116
            .:....:|....|||.:|....|     :..::.||...:....||.|  |..::...|..||||
Zfish   292 SVSCMRNSHRISSLLCDPQEGYLQSLEVSNLYLYDSVLMLANAFYRKLEDRKWHSMASLNCIRKS 356

  Fly   117 TIRVN---SLLEWCWHHQLLKVVAIAQDFMESLIVYSYNPFPVL--QFIE------RRLDN---- 166
            |...|   |:||.....::..:..| .||||: ...|:..|.:|  .|.|      :||..    
Zfish   357 TKPWNGGWSMLETIQKGRITGLTGI-MDFMEN-GSNSHVQFEILGTSFSETFGKDIKRLATWDSV 419

  Fly   167 ---STVIFEKRLEN-LHGYEVPIALGGSSPRLIVYRDLEGKLIFSGPVGNFMKSFEQRYN----- 222
               :..:.|.|:|| :.|..|.:......|.::|..::.|:              .:||.     
Zfish   420 HGLNGSLKESRIENGMQGVTVKVVTLLEDPFVMVAENILGQ--------------PKRYKGFSID 470

  Fly   223 ----CRLVQPYPFDESAISPAR-----------DLIASVQNGSVQIALGA--IYPQ--------V 262
                ...:..:.:|...::.::           .:|..:.|....:|:.|  |.|:        .
Zfish   471 VLEALAKILGFKYDIYQVADSKYGSQLSNGSWNGMIGELINKRADLAVSAITITPERENVVDFSK 535

  Fly   263 PYTGYSYPIELMSWCLMMPVPEEVPHSQLYSMVFSP--------MAFGITIVAMVLISLTLSMAL 319
            .|..||..|       :...|||  ...::|: |:|        :|..|.:|.:::..||....|
Zfish   536 RYMDYSVGI-------LHRKPEE--KINIFSL-FAPFDLAVWACIAAAIPVVGVLIFLLTRMQML 590

  Fly   320 R------LHGYRVSFSEYFLHDSCLRGVLSQSFYEVLRA------PALIKAMYLVICLLGLLITS 372
            |      .|           |.|.:...|..:.:.|..|      .:::.::     .|.:::.|
Zfish   591 RSQNPPGAH-----------HASSMSNSLHSAIWIVYGAFVQQGGDSVVGSV-----ALRIVMGS 639

  Fly   373 WYNSYFSTFVTSAPRFPQLTSYESIRHSNIKIVIWKPEYEMLLFFSENMEKYSSIFQLQEDYKEF 437
            |:  .|:..|.|:                               ::.|:..:.::.::....:.|
Zfish   640 WW--LFTLIVCSS-------------------------------YTANLAAFLTVSRMDNTIRTF 671

  Fly   438 LHLRDSFDTRYGYMM--------------PMEKWSLMKEQQRVF----------SSP-------- 470
            ..|....|..||.:.              |:|:.|...|..|..          |||        
Zfish   672 QDLARQMDFAYGTVRDSAVYDYFKAKGTNPLEQDSTYAELWRTISKNNGQDFSVSSPSEGIRKAK 736

  Fly   471 --------------LFSLQDDLCVFHTVPIV----------FPMVKNSIFKEPFDRLILDVTATG 511
                          ..:|.||.|   |:.:.          ..|...|.:::...:.||::...|
Zfish   737 KGPYAFLWDMAVVEYAALTDDDC---TITVSGNSMSSKGYGIAMQHGSPYRDLISQKILELQEKG 798

  Fly   512 ----LLSRWRDMSFTEMIKAGQLGLEDRGHPK-EFRAMKVGDLIQIWRFVGWMLGLATIVFLLEL 571
                |..:|       ..:.|:..|....:.: :.|::|:.....::..:...|.||.:|..|| 
Zfish   799 DLDVLKQKW-------WPRTGRCDLNSHSNAQPDGRSLKLHSFAGVFCILAAGLLLACLVAALE- 855

  Fly   572 ICFWRHKMWQNMKYMFCRNK 591
                   ||.|...  ||.:
Zfish   856 -------MWWNSNR--CRQE 866

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
grid1bXP_009304811.1 PBP1_iGluR_delta_1 25..424 CDD:107387 49/198 (25%)
ANF_receptor 36..400 CDD:279440 45/174 (26%)
Periplasmic_Binding_Protein_Type_2 437..809 CDD:304360 69/454 (15%)
Lig_chan 565..840 CDD:278489 49/333 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591147
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.