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Protein Alignment Ir94d and Gria1

DIOPT Version :9

Sequence 1:	NP_001138099.1	Gene:	Ir94d / 7354412	FlyBaseID:	FBgn0259193	Length:	593	Species:	Drosophila melanogaster
Sequence 2:	NP_113796.1	Gene:	Gria1 / 50592	RGDID:	621531	Length:	907	Species:	Rattus norvegicus

Alignment Length:	440	Identity:	78/440 - (17%)
Similarity:	140/440 - (31%)	Gaps:	152/440 - (34%)

- Green bases have known domain annotations that are detailed below.

  Fly   239 ARDLIASVQNGSV-QIALG----AIYP------QVPYTGYSYPIELMSWCLMMPVPEEVPHSQLY 292
            |||......||.| ::..|    |:.|      :.....:|.|...:...:|:..|::....
  Rat   466 ARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPG--- 527

  Fly   293 SMVFS---PMAFGI---TIVAMVLISLTLSMALRLHGYRVSFSEYFLHDSCLR------------ 339
              |||   |:|:.|   .:.|.:.:|:.|.:..|       ||.|..|.....
  Rat   528 --VFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSR-------FSPYEWHSEEFEEGRDQTTSDQSN 583

  Fly   340 --GVLSQSFYEV---LRAPALIKAMYLVICLLG-------LLITSWYNSYFSTFVTSAPRFPQLT 392
              |:.:..::.:   ::....|....|...::|       |:|.|.|.:..:.|:|.......:.
  Rat   584 EFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIE 648

  Fly   393 SYESI--------------------RHSNIKIV--IW------------KPEYEMLLFFSENMEK 423
            |.|.:                    |.|.|.:.  :|            :...|.::...::..|
  Rat   649 SAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGK 713

  Fly   424 YSSIFQLQEDYKEFLHLRDSFDTR----------YGYMMPMEKWSLMKEQQRVFSSPLFSLQDDL 478
            |:  :.|:....|::..|...||.          ||...|
  Rat   714 YA--YLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATP------------------------- 751

  Fly   479 CVFHTVPIVFPMVKNSIFKEPFDRLILDVTATGLLSR-----WRDMSFTEMIKAGQLGLEDRGHP 538
                         |.|..:.|.:..:|.:...|||.:     |.|        .|:.|.......
  Rat   752 -------------KGSALRNPVNLAVLKLNEQGLLDKLKNKWWYD--------KGECGSGGGDSK 795

  Fly   539 KEFRAMKVGDLIQIWRFVGWMLGLATIVFLLELICFWRHKMWQNMKYMFC 588
            .:..|:.:.::..::..:...||||.:|.|:| .|:......:.|| .||
  Rat   796 DKTSALSLSNVAGVFYILIGGLGLAMLVALIE-FCYKSRSESKRMK-GFC 843

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.