DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and grin2da

DIOPT Version :9

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:XP_009292354.1 Gene:grin2da / 449864 ZFINID:ZDB-GENE-041008-124 Length:1916 Species:Danio rerio


Alignment Length:499 Identity:90/499 - (18%)
Similarity:170/499 - (34%) Gaps:177/499 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 GNFMKSFEQRYNCRLV----QPY----PFDESAISPARDL---------------IASVQNGSVQ 252
            |.|:|..:...:.|:|    :|:    |.|....|..||.               |.|:::....
Zfish   443 GPFLKPLDDSQHLRVVTLEERPFVIVEPADPGTGSCIRDSVPCRLPLNNSMVVEGIQSMKHCCKG 507

  Fly   253 IALGAIYPQVPYTGYSYPIELMS-----------WCLMMPVPEEVPHSQLYSMVFSPMAFGITIV 306
            ..:..:.......|::|.:.|::           |..|:   .||...:      :.||.|    
Zfish   508 FCIDVLKRLAKIVGFTYDLYLVTNGRHGKNIDGQWNGMV---GEVVSKR------ADMAIG---- 559

  Fly   307 AMVLISLTLSMALRLHGYRVSFSEYFLHD------SCLRGVLSQSFYEVLRAPALIKAMYLVICL 365
                 |||::   ......|.||..|:..      |...|.:|.|.:....:|| :..|..|:||
Zfish   560 -----SLTIN---EERSEVVEFSVPFVETGISVMVSRSNGTVSPSAFLEPYSPA-VWVMMFVMCL 615

  Fly   366 LGLLITSWYNSYFS-------------------------------TFVTSAP-RFPQLTSYESIR 398
            ..:.:|.:...:||                               .|..|.| ..|:.|:     
Zfish   616 SVVAVTVFIFEFFSPVGYNRSLQSGKTAGGSKFTIGKSIWLLWALVFNNSVPVENPRGTT----- 675

  Fly   399 HSNIKIVIWKPEYEMLLF---FSENMEKYSSIFQLQEDY---------KEFLH------------ 439
             |.|.:::|  .:..::|   ::.|:    :.|.:||:|         |:|.|            
Zfish   676 -SKIMVLVW--AFFAVIFLASYTANL----AAFMIQEEYIDTVSGLSDKKFQHPTEQYPPLRFGT 733

  Fly   440 ---------LRDSFDTRYGYMM---------PMEKWSLMKEQQRVFSSPLFSL---QDDLC---- 479
                     :|.::...:.||:         .:|.....|....::.:.:.:.   :|:.|    
Zfish   734 VPNGSTEENIRSNYPNMHQYMVRNNQRGVEDAIENLKTGKLDAFIYDAAVLNYMARKDEGCKVMT 798

  Fly   480 -----VFHTVPIVFPMVKNSIFKEPFDRLILDVTATGLLSRWRDMSFTEMIKAGQLGLEDRGHPK 539
                 ||.|......:.|||.:|.|.|..:|.:.....:         :|::  :|.|....|..
Zfish   799 IGSGKVFATTGYGVALHKNSRWKRPLDLALLQLVGDDEI---------DMLE--RLWLSGICHND 852

  Fly   540 EFRAMK----VGDLIQIWRFVGWMLGLATIVFLLELICFW--RH 577
            :...|.    :.::..::..:...:||:.:||..|.:.:|  ||
Zfish   853 KIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWKLRH 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
grin2daXP_009292354.1 PBP1_iGluR_NMDA_NR2 42..441 CDD:107373
PBP2_iGluR_NMDA_Nr2 452..851 CDD:270436 77/443 (17%)
HisJ <507..>590 CDD:223904 18/103 (17%)
Lig_chan 605..877 CDD:278489 47/295 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591782
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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