DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and grid2

DIOPT Version :9

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:729 Identity:137/729 - (18%)
Similarity:227/729 - (31%) Gaps:242/729 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QLH----LLLVALVLLSPGGDSFYHSLIHHLNRELKIEYVLLLGNFDTTWLDI---LWQLPVSVL 60
            :||    .|..|::.:||.....:.:.:...|          |..||..|:.|   :..:.|..|
Zfish   219 ELHRYRDTLRRAVLFMSPATAKAFITEVVETN----------LVAFDCQWIIINEEISDMDVQEL 273

  Fly    61 QIKEHS-----RETYSLLENPS-------HNVLT-IAFVNDSPEDILEILYRN-----LRMLNTQ 107
            .:|...     |:|:.|.:|.|       |.:.| :....|....:|||..|.     |.:.||.
Zfish   274 VMKSIGRLTLVRQTFPLPQNTSQRCVRNNHRINTSLCDPKDPKAQMLEITNRYIYDTVLLLANTF 338

  Fly   108 PVLLVIRK-------STIRVNSLLEWCWHHQLLKVVAI-AQDFMESLIVYSYNPFPVLQFIERRL 164
            ...|..||       |.||..| ..|.....:|:.|.. ....:.||:.::.|.           
Zfish   339 HRKLEDRKWHSMASLSCIRKGS-KPWQGGKSMLETVKKGGVSGLTSLLEFNDNG----------- 391

  Fly   165 DNSTVIFE--------------KRL---ENLHGYEVPIALGGSSPRLIVYRDLEGKLIFSGPVGN 212
            .|..:.||              .||   :.:||      |.|:    :..|.||          |
Zfish   392 SNPNIHFEILGTNYGEDRGRGVSRLATWDPIHG------LNGT----LTDRKLE----------N 436

  Fly   213 FMKSFEQRYNCRLVQPYPF-DESAISPARDLIASVQNGSVQIALGAIYPQVPYTGYSYPIELMSW 276
            .|:....|....|.:|:.. .|:.:...:    ..|..|:.: |.|:   ..|.|:.|.|.:   
Zfish   437 NMRGVVLRVVTVLEEPFVMVSENVLGKPK----KYQGFSIDV-LDAL---ANYLGFKYEIYV--- 490

  Fly   277 CLMMPVPEEVPHSQ----LYSMVFSPMAFGITIVAMVLISLT------LSMALRLHGYRVSFSEY 331
                 .|:....||    .::.:...:.|....|.:..:::|      :....|...|.|     
Zfish   491 -----APDHKYGSQQADGTWNGLIGELVFKRADVGLSALTITPERESVVDFTTRYMDYSV----- 545

  Fly   332 FLHDSCLRGVLSQSFYEVLRAPALIKAMYL--------VICLLGLLI------------------ 370
                    |||.:.....:...|.:....|        .:.|:|.|:                  
Zfish   546 --------GVLLRKAERTVDMFACLAPFDLSLWACIAGTVLLVGTLVYLLNWLNPPRLPMGSVSS 602

  Fly   371 TSWYNS---YFSTFVTSAPRFPQLTSYESIRHSNIKIVIWKPEYEMLLFFSENMEKYSSIFQLQE 432
            |:.|||   .:.:||......|    |.::....:..|.|.....::..::.|:..:.:|.:::.
Zfish   603 TTLYNSMWFVYGSFVQQGGEVP----YTTLATRMMMGVWWLFALIVISSYTANLAAFLTISRIEN 663

  Fly   433 DYKEFLHLRDSFDTRYGY--------------MMPMEK-------WSLM-------------KEQ 463
            ..:....|....|..||.              |.|.|:       |.::             ||.
Zfish   664 SIQSLQDLAKQTDLPYGTVLDSAVYDQVRSKGMNPFERDPMYSQMWRMINRTGGAENNVEESKEG 728

  Fly   464 QRVFSSPLF------------SLQDDLCVFHTVP-------IVFPMVKNSIFKEPFDRLILDVTA 509
            .|......|            ::.|:.|..:||.       ....|...|.:::.|.:.||::..
Zfish   729 IRKVKYGRFAFVWDAAVLEYVAINDEDCSLYTVSNNVADRGYGMAMQHGSPYRDIFSQRILELQQ 793

  Fly   510 TG----LLSRW--RDMSFTEMIKAGQLGLEDRGHPKEFRAMKVGDLIQIWRFVGWMLGLATIVFL 568
            .|    |..:|  ||.........|              ..|.|..:.|..|.|....||..|.|
Zfish   794 NGDMDILKLKWWPRDSPCDLYSPVG--------------TRKSGSALDIHSFAGVFFVLAAGVVL 844

  Fly   569 LELIC----FWRHK 578
            ..||.    :|..:
Zfish   845 SCLIATVETWWTRR 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..427 CDD:107386 51/235 (22%)
ANF_receptor 42..404 CDD:279440 46/206 (22%)
PBP2_iGluR_delta_2 440..806 CDD:270449 65/398 (16%)
Lig_chan 568..841 CDD:278489 49/290 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591523
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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