DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and gria3b

DIOPT Version :10

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_938174.1 Gene:gria3b / 368416 ZFINID:ZDB-GENE-030616-53 Length:883 Species:Danio rerio


Alignment Length:426 Identity:73/426 - (17%)
Similarity:129/426 - (30%) Gaps:150/426 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 ARDLIASVQNGSV-QIALG----AIYP------QVPYTGYSYPIELMSWCLMMPVPEEVPHSQLY 292
            |||......||.| ::..|    |:.|      :.....:|.|...:...:|:..|::....   
Zfish   472 ARDPETKSWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPG--- 533

  Fly   293 SMVFS---PMAFGI---TIVAMVLISLTLSMALRLHGYRVSFSE----------------YFLHD 335
              |||   |:|:.|   .:.|.:.:|:.|.:..|...|.....|                :.:.:
Zfish   534 --VFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWQLDETDEVKDPQTPPDPPNDFGIFN 596

  Fly   336 SC--LRGVLSQSFYEVLRAPALIKAMYL--VICLLGLLITSWYNSYFSTFVTSAPRFPQLTSYES 396
            |.  ..|...|...::  :|..:....:  |.....|:|.|.|.:..:.|:|.......:.|.|.
Zfish   597 SLWFSLGAFMQQGCDI--SPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAED 659

  Fly   397 I--------------------RHSNIKIVIWKPEYEMLLFFSENME------------------K 423
            :                    |.|.|.:      ||.:..:.::.|                  |
Zfish   660 LAKQTEIAYGTLDSGSTKEFFRRSKIAV------YEKMWSYMKSAEPSVFAKTTPDGVARVRKSK 718

  Fly   424 YSSIFQLQEDYKEFLHLRDSFDTR----------YGYMMPMEKWSLMKEQQRVFSSPLFSLQDDL 478
            ....|.|:....|::..|...||.          ||...|                         
Zfish   719 GKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATP------------------------- 758

  Fly   479 CVFHTVPIVFPMVKNSIFKEPFDRLILDVTATGLLSR-----WRDMSFTEMIKAGQLGLEDRGHP 538
                         |.|..:...:..:|.:...|||.:     |.|        .|:.|.......
Zfish   759 -------------KGSALRNAVNLAVLKLNEQGLLDKLKNKWWYD--------KGECGSGGGDSK 802

  Fly   539 KEFRAMKVGDLIQIWRFVGWMLGLATIVFLLELICF 574
            .:..|:.:.::..::..:...||||.:|.|:| .|:
Zfish   803 DKTSALSLSNVAGVFYILVGGLGLAMMVALIE-FCY 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
gria3bNP_938174.1 Periplasmic_Binding_Protein_type1 25..398 CDD:471960
PBP2_iGluR_AMPA 412..794 CDD:270433 63/380 (17%)
Blue background indicates that the domain is not in the aligned region.

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