DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and GluRIIA

DIOPT Version :9

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster


Alignment Length:533 Identity:94/533 - (17%)
Similarity:176/533 - (33%) Gaps:159/533 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 LKVVAIAQDFMESLIVYSYNPFPVLQFIERRLDNSTVIFEKRLENLHGYEVPIALGGSSPRLIVY 197
            |:.....|||.|...||:........:...:.|:..  |..| |...||.|.:.   |....::.
  Fly   413 LESAGTTQDFSEQRKVYTVVTHYEEPYFMMKEDHEN--FRGR-EKYEGYAVDLI---SKLSELME 471

  Fly   198 RDLEGKLI------------FSGPVGNFMKSFEQRYNCRLVQPYPFDESAISPARDLIASVQNGS 250
            .|.|..::            :.|.:...:....|...|.|         .|:..|..:.......
  Fly   472 FDYEFMIVNGNGKYNPETKQWDGIIRKLIDHHAQIGVCDL---------TITQMRRSVVDFTVPF 527

  Fly   251 VQIALGAIY---PQVPYTGYSY--PIELMSWCLMMPVPEEVPHSQLYSMVFSPMAFGITIVAMVL 310
            :|:.:..::   |..|...:::  |..:..|              :| |:|:.:   |..:|.|.
  Fly   528 MQLGISILHYKSPPEPKNQFAFLEPFAVEVW--------------IY-MIFAQL---IMTLAFVF 574

  Fly   311 ISLTLSMALRLHGYRVSFSEYFLHDSCLR-------------------GVLSQSFYEVL-RAP-- 353
            |:            |:|:.|:...:..::                   |.:.|...::| |.|  
  Fly   575 IA------------RLSYREWLPPNPAIQDPDELENIWNVNNSTWLMVGSIMQQGCDILPRGPHM 627

  Fly   354 ALIKAMYLVICLLGLLITSWYNSYFSTFVTSAPRFPQLTSYESIRHSNIKIVIWKPEYEML---- 414
            .::..|:   ....|::.|.|.:..:.|:||......:.|.:.:...:      |..:..:    
  Fly   628 RILTGMW---WFFALMMLSTYTANLAAFLTSNKWQSSIKSLQDLIEQD------KVHFGSMRGGS 683

  Fly   415 --LFFSE-NMEKYSSIFQLQEDYKEFLHLRDSFDT------------RYGYMMPMEKWSLMKEQQ 464
              ||||| |...|...:...:|:..     .:|.:            :.||...||..||....:
  Fly   684 TSLFFSESNDTDYQRAWNQMKDFNP-----SAFTSTNKEGVARVRKEKGGYAFLMETTSLTYNIE 743

  Fly   465 RVFSSPLFSLQDDLCVFH---TVPIVFPMVKNSIFKEPFDRLILDVTATGLLSR-----WRDMSF 521
            |  :..|..:.:.:...|   .||:      .|.::......||.::..|.|.:     |::.:.
  Fly   744 R--NCDLTQIGEQIGEKHYGLAVPL------GSDYRTNLSVSILQLSERGELQKMKNKWWKNHNV 800

  Fly   522 T----EMIKAGQLGLEDRGHPKEFRAMKVGDLIQI--------W---------RFVGWMLGLATI 565
            |    ..:...:|.:.:.|  ..|..:..|.||.:        |         |...|....|.:
  Fly   801 TCDSYHEVDGDELSIIELG--GVFLVLAGGVLIGVILGIFEFLWNVQNVAVEERVTPWQAFKAEL 863

  Fly   566 VFLLELICFWRHK 578
            :|.|:   ||..|
  Fly   864 IFALK---FWVRK 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377
ANF_receptor 46..386 CDD:279440
PBP2_iGluR_Kainate 426..796 CDD:270432 72/436 (17%)
Lig_chan 556..828 CDD:278489 55/325 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462681
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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