DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and GluRIIC

DIOPT Version :9

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:531 Identity:97/531 - (18%)
Similarity:171/531 - (32%) Gaps:168/531 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 VLQFIERRLDNSTVIFEKRLENLHGYEVPIALG-------GSSPRLIVYRDLEGKLIFSGPVGNF 213
            :|||.|   |...:.|     |:..|:....:|       |...:|.|....:.|:|:       
  Fly   374 ILQFDE---DGQRITF-----NIEVYDPLDGIGIAIWDPRGQITQLNVDVKAQKKMIY------- 423

  Fly   214 MKSFEQRYNCRLVQPY-PFDESAISPARDL----IASVQNGSVQIA------LGAIYPQVPYTGY 267
                  |...|:..|| .::|:    ||:|    .|..|..:|.:.      :|..|..||....
  Fly   424 ------RVATRIGPPYFSYNET----ARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQ 478

  Fly   268 SY---PIELMSW----------------CLM-------MPVPEEVPHSQLYSMVF---SP----- 298
            .|   ..|...|                |.:       ..|...||..||...:.   ||     
  Fly   479 QYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKT 543

  Fly   299 -----MAFGITIVAMVLISLTLSMALRLHGYRVSFSEYFLHDSCLRG--VLSQSF---------- 346
                 ..||..:...:|||:.:...|:....|:|..::.....|.|.  ||...:          
  Fly   544 LDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQWRIHNTGWLTV 608

  Fly   347 -------YEVLRAPALIKAMYLVICLLGLLITSWYNSYFSTFVTSA------PRFPQLTSYESIR 398
                   .::|.....::.......:..::|.:.|.:..:.|:||:      .....|::.:.::
  Fly   609 ASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVK 673

  Fly   399 HSNIKIVIWKPEYEMLLFFSENMEKYSSIFQLQEDYKEFLHLRDSFD-------TRYGYMMPMEK 456
            ...|   .....|.:|...:|.:  |...|.|..:.....:.:|:.:       .|..||..||.
  Fly   674 FGTI---YGGSTYNLLADSNETV--YRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMET 733

  Fly   457 WSLMKEQQRVFSSPLFSLQDDLCVFHTVPIVFPMVKNSIFKEPFDRLILDVTATG----LLSRW- 516
            .:|  |..|..:..|.|:.:.....| ..|..|.  .:.::......||.::..|    |..:| 
  Fly   734 TTL--EYHREQNCDLRSVGEKFGEKH-YAIAVPF--GAEYRSNLSVAILKLSERGELYDLKQKWW 793

  Fly   517 ----------------RDMSFTEM------IKAG-----------------QLGLEDRGHPKEFR 542
                            .||:|.|:      :.||                 |:.||:|...|:..
  Fly   794 KNPNASCFEEPDPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEERLTFKDAF 858

  Fly   543 AMKVGDLIQIW 553
            ..::..::.:|
  Fly   859 KKEIRFVLCVW 869

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 9/37 (24%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141
PBP2_iGluR_Kainate 423..794 CDD:270432 71/397 (18%)
Lig_chan 554..828 CDD:278489 48/283 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462685
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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