DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and Grik3

DIOPT Version :10

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_001106187.1 Gene:Grik3 / 298521 RGDID:71027 Length:919 Species:Rattus norvegicus


Alignment Length:256 Identity:55/256 - (21%)
Similarity:85/256 - (33%) Gaps:81/256 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 LPVSVLQIKEHSRETYSLLENPSHNVLTIAFVNDSPEDILEILYRNLRMLNTQPVLLVIRK---- 115
            |.||:|..|.:.       .|||    ..:|:|....||.  :|..|..|....||.||.:    
  Rat   538 LGVSILYRKPNG-------TNPS----VFSFLNPLSPDIW--MYVLLAYLGVSCVLFVIARFSPY 589

  Fly   116 -----------STIRVN--SLLEWCWH---------HQLL------KVVAIAQDFMESLIVYSYN 152
                       |.:..|  :||...|.         .:|:      :::.....|...:|:.||.
  Rat   590 EWYDAHPCNPGSEVVENNFTLLNSFWFGMGSLMQQGSELMPKALSTRIIGGIWWFFTLIIISSYT 654

  Fly   153 ----PFPVLQFIERRLDN------------------STVIFEKRLENLHGYEVPIALGGSSPRLI 195
                .|..::.:|..:|:                  :|:.|.|: ..:..:|...|...|.|..:
  Rat   655 ANLAAFLTVERMESPIDSADDLAKQTKIEYGAVKDGATMTFFKK-SKISTFEKMWAFMSSKPSAL 718

  Fly   196 VYRDLEG-KLIFSGPVGNFMKSFEQRY----NCRLVQ--------PYPFDESAISPARDLI 243
            |..:.|| :...:......|:|....|    ||.|.|        .|.......||.||.|
  Rat   719 VKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKI 779

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
Grik3NP_001106187.1 PBP1_iGluR_Kainate 37..417 CDD:380605
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 55/256 (21%)
Blue background indicates that the domain is not in the aligned region.

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