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Protein Alignment Ir94d and Gria3

DIOPT Version :9

Sequence 1:	NP_001138099.1	Gene:	Ir94d / 7354412	FlyBaseID:	FBgn0259193	Length:	593	Species:	Drosophila melanogaster
Sequence 2:	NP_001106213.1	Gene:	Gria3 / 29628	RGDID:	70958	Length:	888	Species:	Rattus norvegicus

Alignment Length:	522	Identity:	90/522 - (17%)
Similarity:	162/522 - (31%)	Gaps:	195/522 - (37%)

- Green bases have known domain annotations that are detailed below.

  Fly   164 LDNSTVIFEKRLENL------HGYEVPIALGGSSPRLIVY------------RDLEGKLIFSGPV 210
            |::..|:::|..|.|      .||.|.:|...:....|.|            ||.|.| |::|.|
  Rat   425 LESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETK-IWNGMV 488

  Fly   211 GNFMKSFEQRYNCRLVQPYPFDESAISPARDLIASVQNGSVQIALGAIYPQVPYTGYSYPIELMS 275
            |..:              |...:.|::|              :.:..:..:|  ..:|.|...:.
  Rat   489 GELV--------------YGRADIAVAP--------------LTITLVREEV--IDFSKPFMSLG 523

  Fly   276 WCLMMPVPEEVPHSQLYSMVFS---PMAFGI---TIVAMVLISLTLSMALRLHGYRVSFSEYFLH 334
            ..:|:..|::....     |||   |:|:.|   .:.|.:.:|:.|.:..|...|     |:.|.
  Rat   524 ISIMIKKPQKSKPG-----VFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPY-----EWHLE 578

  Fly   335 DSCLR--------------GVLSQSFYEV---LRAPALIKAMYLVICLLG-------LLITSWYN 375
            |:...              |:.:..::.:   ::....|....|...::|       |:|.|.|.
  Rat   579 DNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYT 643

  Fly   376 SYFSTFVTSAPRFPQLTSYESI--------------------RHSNIKIVIWKPEYEMLLFFSEN 420
            :..:.|:|.......:.|.|.:                    |.|.|.:      ||.:..:.::
  Rat   644 ANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAV------YEKMWSYMKS 702

  Fly   421 ME------------------KYSSIFQLQEDYKEFLHLRDSFDTR----------YGYMMPMEKW 457
            .|                  |....|.|:....|::..|...||.          ||...|
  Rat   703 AEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATP---- 763

  Fly   458 SLMKEQQRVFSSPLFSLQDDLCVFHTVPIVFPMVKNSIFKEPFDRLILDVTATGLLSR-----WR 517
                                              |.|......:..:|.:...|||.:     |.
  Rat   764 ----------------------------------KGSALGNAVNLAVLKLNEQGLLDKLKNKWWY 794

  Fly   518 DMSFTEMIKAGQLGLEDRGHPKEFRAMKVGDLIQIWRFVGWMLGLATIVFLLELICFWRHKMWQN 582
            |        .|:.|........:..|:.:.::..::..:...||||.:|.|:| .|:......:.
  Rat   795 D--------KGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIE-FCYKSRAESKR 850

  Fly   583 MK 584
            ||
  Rat   851 MK 852

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.