DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and GRIA3

DIOPT Version :10

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_000819.4 Gene:GRIA3 / 2892 HGNCID:4573 Length:894 Species:Homo sapiens


Alignment Length:522 Identity:90/522 - (17%)
Similarity:163/522 - (31%) Gaps:195/522 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 LDNSTVIFEKRLENL------HGYEVPIALGGSSPRLIVY------------RDLEGKLIFSGPV 210
            |::..|:::|..|.|      .||.|.:|...:....|.|            ||.|.| |::|.|
Human   431 LESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETK-IWNGMV 494

  Fly   211 GNFMKSFEQRYNCRLVQPYPFDESAISPARDLIASVQNGSVQIALGAIYPQVPYTGYSYPIELMS 275
            |..:              |...:.|::|              :.:..:..:|  ..:|.|...:.
Human   495 GELV--------------YGRADIAVAP--------------LTITLVREEV--IDFSKPFMSLG 529

  Fly   276 WCLMMPVPEEVPHSQLYSMVFS---PMAFGI---TIVAMVLISLTLSMALRLHGYRVSFSEYFLH 334
            ..:|:..|::....     |||   |:|:.|   .:.|.:.:|:.|.:..|...|     |:.|.
Human   530 ISIMIKKPQKSKPG-----VFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPY-----EWHLE 584

  Fly   335 DSCLR--------------GVLSQSFYEV---LRAPALIKAMYLVICLLG-------LLITSWYN 375
            |:...              |:.:..::.:   ::....|....|...::|       |:|.|.|.
Human   585 DNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYT 649

  Fly   376 SYFSTFVTSAPRFPQLTSYESI--------------------RHSNIKIVIWKPEYEMLLFFSEN 420
            :..:.|:|.......:.|.|.:                    |.|.|.:      ||.:..:.::
Human   650 ANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAV------YEKMWSYMKS 708

  Fly   421 ME------------------KYSSIFQLQEDYKEFLHLRDSFDTR----------YGYMMPMEKW 457
            .|                  |....|.|:....|::..|...||.          ||...|    
Human   709 AEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATP---- 769

  Fly   458 SLMKEQQRVFSSPLFSLQDDLCVFHTVPIVFPMVKNSIFKEPFDRLILDVTATGLLSR-----WR 517
                                              |.|..:...:..:|.:...|||.:     |.
Human   770 ----------------------------------KGSALRNAVNLAVLKLNEQGLLDKLKNKWWY 800

  Fly   518 DMSFTEMIKAGQLGLEDRGHPKEFRAMKVGDLIQIWRFVGWMLGLATIVFLLELICFWRHKMWQN 582
            |        .|:.|........:..|:.:.::..::..:...||||.:|.|:| .|:......:.
Human   801 D--------KGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIE-FCYKSRAESKR 856

  Fly   583 MK 584
            ||
Human   857 MK 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
GRIA3NP_000819.4 PBP1_iGluR_AMPA_GluR3 35..409 CDD:380610
PBP2_iGluR_AMPA 422..805 CDD:270433 78/466 (17%)
Blue background indicates that the domain is not in the aligned region.

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