DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and GRIA1

DIOPT Version :9

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens


Alignment Length:819 Identity:134/819 - (16%)
Similarity:251/819 - (30%) Gaps:309/819 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GQLHLLLVALVLLSPGGDSF----YHSLIHHLNRELKIEYVLLLGNFDTTWLDILWQLPVSVLQI 62
            |.||:..:.        .||    .:..:..|..||:...:.::.::.       ||..|.:...
Human   112 GALHVCFIT--------PSFPVDTSNQFVLQLRPELQDALISIIDHYK-------WQKFVYIYDA 161

  Fly    63 KEHSRETYSLLENPSHNVLTIAFVN--DSPEDILEILYRNLRMLNTQPVLLVIRKSTIRVNSLL- 124
            .........:|:..:.....:..||  .:.|:...:|:::|.....:  |:|:...:.|:|::| 
Human   162 DRGLSVLQKVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEKKKER--LVVVDCESERLNAILG 224

  Fly   125 -------EWCWHHQLLKVVAI----AQDFMES--------LIVYSYN-PFPVLQFIER------- 162
                   ....:|.:|..:..    ...|.||        |:.|:.. |..::|..:.       
Human   225 QIIKLEKNGIGYHYILANLGFMDIDLNKFKESGANVTGFQLVNYTDTIPAKIMQQWKNSDARDHT 289

  Fly   163 RLD------------NSTVIFEKRLENLHGYEVPIALGGSSPRLI------------VYRDLEGK 203
            |:|            :...:..:..::|....:.|:..|::...:            :.|.|: :
Human   290 RVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQ-Q 353

  Fly   204 LIFSGPVGNFM---KSFEQRYNCRLVQP----------YPFDESAISPARDLIASVQNGSVQ--- 252
            :.|.|..||..   |.....|...:::.          :..|:..:..|.|..|...|.|||   
Human   354 VRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAATDAQAGGDNSSVQNRT 418

  Fly   253 -------------------------------IALGAIYPQVPYTGYSYPIELMS----------- 275
                                           :.|.|...:  :.||||.:|::|           
Human   419 YIVTTILEDPYVMLKKNANQFEGNDRYEGYCVELAAEIAK--HVGYSYRLEIVSDGKYGARDPDT 481

  Fly   276 --WCLMMP------------------VPEEV-----PHSQL-YSM-----------VFS---PMA 300
              |..|:.                  |.|||     |...| .|:           |||   |:|
Human   482 KAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLA 546

  Fly   301 FGI---TIVAMVLISLTLSMALRLHGYRVSFSEYFLHDSCLR--------------GVLSQSFYE 348
            :.|   .:.|.:.:|:.|.:..|       ||.|..|.....              |:.:..::.
Human   547 YEIWMCIVFAYIGVSVVLFLVSR-------FSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFS 604

  Fly   349 V---LRAPALIKAMYLVICLLG-------LLITSWYNSYFSTFVTSAPRFPQLTSYESI------ 397
            :   ::....|....|...::|       |:|.|.|.:..:.|:|.......:.|.|.:      
Human   605 LGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEI 669

  Fly   398 --------------RHSNIKIV--IW------------KPEYEMLLFFSENMEKYSSIFQLQEDY 434
                          |.|.|.:.  :|            :...|.::...::..||:  :.|:...
Human   670 AYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKYA--YLLESTM 732

  Fly   435 KEFLHLRDSFDTR----------YGYMMPMEKWSLMKEQQRVFSSPLFSLQDDLCVFHTVPIVFP 489
            .|::..|...||.          ||...|                                    
Human   733 NEYIEQRKPCDTMKVGGNLDSKGYGIATP------------------------------------ 761

  Fly   490 MVKNSIFKEPFDRLILDVTATGLLSR-----WRDMSFTEMIKAGQLGLEDRGHPKEFRAMKVGDL 549
              |.|..:.|.:..:|.:...|||.:     |.|        .|:.|........:..|:.:.::
Human   762 --KGSALRNPVNLAVLKLNEQGLLDKLKNKWWYD--------KGECGSGGGDSKDKTSALSLSNV 816

  Fly   550 IQIWRFVGWMLGLATIVFLLELICFWRHKMWQNMKYMFC 588
            ..::..:...||||.:|.|:| .|:......:.|| .||
Human   817 AGVFYILIGGLGLAMLVALIE-FCYKSRSESKRMK-GFC 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..399 CDD:107385 45/304 (15%)
ANF_receptor 47..382 CDD:279440 44/287 (15%)
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 68/437 (16%)
Lig_chan 548..827 CDD:278489 48/333 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156062
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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