DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and Grik5

DIOPT Version :10

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:XP_006228444.1 Gene:Grik5 / 24407 RGDID:2735 Length:980 Species:Rattus norvegicus


Alignment Length:495 Identity:91/495 - (18%)
Similarity:170/495 - (34%) Gaps:110/495 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 IERRLDNSTVIFEKRLENLHGYEVPIALGGSSPRLIVYRDLEGKLIFSGPVGNFMKSFEQ----R 220
            :.:.|.|.|::....|||.:....|           .::.|.|...|.|...:.::...:    |
  Rat   408 LSQTLANKTLVVTTILENPYVMRRP-----------NFQALSGNERFEGFCVDMLRELAELLRFR 461

  Fly   221 YNCRLVQ------PYPFDESAISPARDLIASVQNGSVQIALGAIYPQ-VPYTGYSYPIELMSWCL 278
            |..|||:      |.| :.|......:|| :.|...:.:|...|..: .....:|.|...:...:
  Rat   462 YRLRLVEDGLYGAPEP-NGSWTGMVGELI-NRQKADLAVAAFTITAEREKVIDFSKPFMTLGISI 524

  Fly   279 MMPV-PEEVPHSQLYSMVFSPMAFGITIVAMVLISLTLSMALRLHGYRVSFSEYFLHDSCLR--- 339
            :..| ....|....:...|||..:...::|.:.:|..|.:|.||..|     |::....|||   
  Rat   525 LYRVHMGRKPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSPY-----EWYNPHPCLRARP 584

  Fly   340 -----------------GVLSQSFYEVLRAPALIKAMYLVICLLG------LLITSWYNSYFSTF 381
                             |...|...|::  |..:...    |:.|      |:|.|.|.:..:.|
  Rat   585 HILENQYTLGNSLWFPVGGFMQQGSEIM--PRALSTR----CVSGVWWAFTLIIISSYTANLAAF 643

  Fly   382 VT-SAPRFPQLTSYESIRHSNIKIVIWKPEYEMLLFFSENMEKYSSIFQLQEDYKEFLHLRDS-- 443
            :| .....|..::.:....:||:.........|..|.:...:.|..::...:..:..:.::.:  
  Rat   644 LTVQRMEVPVESADDLADQTNIEYGTIHAGSTMTFFQNSRYQTYQRMWNYMQSKQPSVFVKSTEE 708

  Fly   444 -----FDTRYGYMMPMEKWSLMKEQQRVFSSPLFSLQDDLCVFHTVPIVFPMVKNSIFKEPFDRL 503
                 .::||.:::.    |.|.|..|..:..|..:..   :..|......|...|.|::.....
  Rat   709 GIARVLNSRYAFLLE----STMNEYHRRLNCNLTQIGG---LLDTKGYGIGMPLGSPFRDEITLA 766

  Fly   504 ILDVTATGLLSRWRDMSFTEMIK-----AGQLGLEDRGHPKEFRAMKVGDLIQIWRFVGWMLGLA 563
            ||.:.....|         |::|     .|:...|:....|......:|.:     ||..:.||.
  Rat   767 ILQLQENNRL---------EILKRKWWEGGRCPKEEDHRAKGLGMENIGGI-----FVVLICGLI 817

  Fly   564 TIVFLLELICFWR-------------HKMWQNMKY-MFCR 589
            ..||:..:...|.             .:|.|.::: :.||
  Rat   818 IAVFVAVMEFIWSTRRSAESEEVSVCQEMLQELRHAVSCR 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
Grik5XP_006228444.1 PBP1_iGluR_Kainate_KA1_2 23..401 CDD:380616
Periplasmic_Binding_Protein_Type_2 414..785 CDD:473866 75/410 (18%)
Blue background indicates that the domain is not in the aligned region.

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