DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and Grik3

DIOPT Version :9

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:256 Identity:55/256 - (21%)
Similarity:85/256 - (33%) Gaps:81/256 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 LPVSVLQIKEHSRETYSLLENPSHNVLTIAFVNDSPEDILEILYRNLRMLNTQPVLLVIRK---- 115
            |.||:|..|.:.       .|||    ..:|:|....||.  :|..|..|....||.||.:    
Mouse   538 LGVSILYRKPNG-------TNPS----VFSFLNPLSPDIW--MYVLLAYLGVSCVLFVIARFSPY 589

  Fly   116 -----------STIRVN--SLLEWCWH---------HQLL------KVVAIAQDFMESLIVYSYN 152
                       |.:..|  :||...|.         .:|:      :::.....|...:|:.||.
Mouse   590 EWYDAHPCNPGSEVVENNFTLLNSFWFGMGSLMQQGSELMPKALSTRIIGGIWWFFTLIIISSYT 654

  Fly   153 ----PFPVLQFIERRLDN------------------STVIFEKRLENLHGYEVPIALGGSSPRLI 195
                .|..::.:|..:|:                  :|:.|.|: ..:..:|...|...|.|..:
Mouse   655 ANLAAFLTVERMESPIDSADDLAKQTKIEYGAVKDGATMTFFKK-SKISTFEKMWAFMSSKPSAL 718

  Fly   196 VYRDLEG-KLIFSGPVGNFMKSFEQRY----NCRLVQ--------PYPFDESAISPARDLI 243
            |..:.|| :...:......|:|....|    ||.|.|        .|.......||.||.|
Mouse   719 VKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKI 779

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
Grik3NP_001074566.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 55/256 (21%)
Glutamate binding. /evidence=ECO:0000250 690..692 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846663
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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