DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir94d and GRIN3B

DIOPT Version :9

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_619635.1 Gene:GRIN3B / 116444 HGNCID:16768 Length:1043 Species:Homo sapiens


Alignment Length:488 Identity:90/488 - (18%)
Similarity:160/488 - (32%) Gaps:149/488 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 LLKVVAIAQDFMESLIVYSYNPFPVLQFIERRLDNSTVIFEKRLENLHGYEVPIALGGSSP---- 192
            ||.:..:|:..:|:.|      ..::|.:.|.|.::..:..||..    ...|:..|...|    
Human   278 LLALGEVARPPLEAAI------HDIVQLVARALGSAAQVQPKRAL----LPAPVNCGDLQPAGPE 332

  Fly   193 -------RLIVYRDLEGKLIFSGPV---GNFMKSFEQRYNCRLVQPYPFDESAISPARDLIASVQ 247
                   |.:.....:|:   :|||   |:......:.:....::..|..    :||...:.|.:
Human   333 SPGRFLARFLANTSFQGR---TGPVWVTGSSQVHMSRHFKVWSLRRDPRG----APAWATVGSWR 390

  Fly   248 NGSVQIALG--AIYPQVPYTGYSYPIELMSWCLMMPV-----PEE---VPHSQL----------- 291
            :|.:.:..|  :..|..|.....:|...:...|..|.     |:|   .|..||           
Human   391 DGQLDLEPGGASARPPPPQGAQVWPKLRVVTLLEHPFVFARDPDEDGQCPAGQLCLDPGTNDSAT 455

  Fly   292 YSMVFSPMAFGITIVAMVLISLTLSMALR--LHGYRVSFSEYFLHDSCL-----------RGVLS 343
            ...:|:.:|.|           :...|||  .:||.:...|....|:..           .|.|.
Human   456 LDALFAALANG-----------SAPRALRKCCYGYCIDLLERLAEDTPFDFELYLVGDGKYGALR 509

  Fly   344 QSFYEVLRAPALIKAMYLVICLLGL-----LITSWYNSYFSTFV--------TSAPRFPQLTSYE 395
            ...:..|....|....::.:....:     .:..:.:.:|||.:        |::|         
Human   510 DGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRARDTASP--------- 565

  Fly   396 SIRHSNIKIVIWKPEYEMLLFFSENMEKYSSIFQLQEDYKEFLHLRDSFDTRYGYMMPMEKWSLM 460
                  |...:|...:...|          .:|..       |||...|.|.|.:..|.......
Human   566 ------IGAFMWPLHWSTWL----------GVFAA-------LHLTALFLTVYEWRSPYGLTPRG 607

  Fly   461 KEQQRVFSSPLFSLQDDLCVFHTVPIVF-PMVKNSIFKEPFDRLILDVTATG---LLSRWR---- 517
            :.:..|||   :|...:||    ..|:| ..|.:...|.|..||::::.|..   :||.:.    
Human   608 RNRSTVFS---YSSALNLC----YAILFRRTVSSKTPKCPTGRLLMNLWAIFCLLVLSSYTANLA 665

  Fly   518 -----DMSFTEMIKAGQLGLED--RGHPKE-FR 542
                 |.:|.|:     .|:.|  ..||.: ||
Human   666 AVMVGDKTFEEL-----SGIHDPKLHHPAQGFR 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
GRIN3BNP_619635.1 PBP1_iGluR_NMDA_NR3 19..405 CDD:107372 25/143 (17%)
PBP2_iGluR_NMDA_Nr3 415..808 CDD:270438 63/334 (19%)
Lig_chan 576..842 CDD:278489 34/147 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156254
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.