DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir94d and gria3

DIOPT Version :10

Sequence 1:NP_001138099.1 Gene:Ir94d / 7354412 FlyBaseID:FBgn0259193 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_001106494.1 Gene:gria3 / 100127683 XenbaseID:XB-GENE-1010483 Length:887 Species:Xenopus tropicalis


Alignment Length:515 Identity:92/515 - (17%)
Similarity:166/515 - (32%) Gaps:171/515 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 LDNSTVIFEKRLENLHGYEVPIALGGSSPRLIVYRD-LEGKLIFSGPVGNFMKSFEQRYNCRLVQ 227
            ::|.|:|....|||      |..:...:..|:...| .||..:  .......|....:|...:|:
 Frog   414 VENKTIIVTTILEN------PYVMKKKNHELLDGNDKYEGYCV--DLASEIAKHVGIKYKLSIVE 470

  Fly   228 PYPFDESAISPARDLIASVQNGSV-QIALG----AIYP------QVPYTGYSYPIELMSWCLMMP 281
            ...:.      |||....:.||.| ::..|    |:.|      :.....:|.|...:...:|:.
 Frog   471 DGKYG------ARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIK 529

  Fly   282 VPEEVPHSQLYSMVFS---PMAFGI---TIVAMVLISLTLSMALRLHGYRVSFSEYFLHDSCLR- 339
            .|::....     |||   |:|:.|   .:.|.:.:|:.|.:..|...|     |:.|.|:... 
 Frog   530 KPQKSKPG-----VFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPY-----EWHLEDTDEAR 584

  Fly   340 ------------GVLSQSFYEV---LRAPALIKAMYLVICLLG-------LLITSWYNSYFSTFV 382
                        |:.:..::.:   ::....|....|...::|       |:|.|.|.:..:.|:
 Frog   585 DPQNPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL 649

  Fly   383 TSAPRFPQLTSYESI--------------------RHSNIKIVIWKPEYEMLLFFSENME----- 422
            |.......:.|.|.:                    |.|.|.:      ||.:..:.::.|     
 Frog   650 TVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAV------YEKMWSYMKSAEPSVFT 708

  Fly   423 -------------KYSSIFQLQEDYKEFLHLRDSFDTR----------YGYMMPMEKWSLMKEQQ 464
                         |....|.|:....|::..|...||.          ||...|           
 Frog   709 KTTDDGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATP----------- 762

  Fly   465 RVFSSPLFSLQDDLCVFHTVPIVFPMVKNSIFKEPFDRLILDVTATGLLSR-----WRDMSFTEM 524
                                       |.|....|.:..:|.::..|:|.:     |.|      
 Frog   763 ---------------------------KGSALGTPVNLAVLKLSEQGILDKLKNKWWYD------ 794

  Fly   525 IKAGQLGLEDRGHPKEFRAMKVGDLIQIWRFVGWMLGLATIVFLLELICFWRHKMWQNMK 584
              .|:.|.:|.|...:..|:.:.::..::..:...||||.:|.|:| .|:......:.||
 Frog   795 --KGECGAKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIE-FCYKSRAESKRMK 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir94dNP_001138099.1 None
gria3NP_001106494.1 PBP1_iGluR_AMPA_GluR3 29..403 CDD:380610
PBP2_iGluR_AMPA 416..798 CDD:270433 78/457 (17%)
Blue background indicates that the domain is not in the aligned region.

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