DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17454 and smndc1

DIOPT Version :9

Sequence 1:NP_001138001.1 Gene:CG17454 / 7354399 FlyBaseID:FBgn0039977 Length:243 Species:Drosophila melanogaster
Sequence 2:NP_997766.1 Gene:smndc1 / 572679 ZFINID:ZDB-GENE-030131-614 Length:237 Species:Danio rerio


Alignment Length:244 Identity:108/244 - (44%)
Similarity:143/244 - (58%) Gaps:32/244 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LHNYKLQLQQVEAALQTDPENEELLKLRSDLDEVITLTRDLIQTQLEEQNKSSYVEPSSTKRDSS 69
            |.|||.|||||||||..||:||:||||:.||.|||.||:||:.:|..|..       :|||    
Zfish     9 LSNYKAQLQQVEAALSIDPDNEDLLKLQKDLQEVIELTKDLLTSQPAEGT-------TSTK---- 62

  Fly    70 NYFDEIEAALLEAEKLVSAAKIWKKGDKCQAKWKEDRQYYDATIEDI-SSTGEVNVIFDAYQNRS 133
                        :.:.|:.:..|:.||.|.|.|.:|.|.|:|.||:| :..|...:.|..|.|..
Zfish    63 ------------SSETVAPSHSWRVGDHCMATWSQDGQVYEAEIEEIDNENGTAAITFAGYGNAE 115

  Fly   134 TTHVNELR---ERTIRNEV--FPSNKRH-RPNQKEYLKKRKQKKQQRFKDLEEERESDKNKWLNF 192
            ...::.|:   |..||:|:  .|.:|:. :..|:||.||:.|||.||.|:||:|||..|:||..|
Zfish   116 VMPLHMLKKVEEGRIRDEIDGKPKSKKELQAEQREYKKKKAQKKVQRMKELEQEREDQKSKWQQF 180

  Fly   193 NNKNQKKN--GMKARSIFASPDNVSGRVGVGTCGTAGKGMTDFTVGEKY 239
            |||...||  |...|||||||::|:|:|||||||.|.|.||.:....||
Zfish   181 NNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKY 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17454NP_001138001.1 TroA-like <22..>116 CDD:294188 35/93 (38%)
TUDOR 95..142 CDD:119391 17/50 (34%)
smndc1NP_997766.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 52..73 6/43 (14%)
TUDOR 76..124 CDD:119391 17/47 (36%)
Nuclear localization signal. /evidence=ECO:0000255 142..160 7/17 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 149..198 27/48 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170588225
Domainoid 1 1.000 66 1.000 Domainoid score I9957
eggNOG 1 0.900 - - E1_KOG3026
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4290
Inparanoid 1 1.050 180 1.000 Inparanoid score I3991
OMA 1 1.010 - - QHG54699
OrthoDB 1 1.010 - - D1459016at2759
OrthoFinder 1 1.000 - - FOG0005574
OrthoInspector 1 1.000 - - oto40546
orthoMCL 1 0.900 - - OOG6_103070
Panther 1 1.100 - - LDO PTHR13681
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4055
SonicParanoid 1 1.000 - - X3989
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

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