DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17454 and smndc1

DIOPT Version :9

Sequence 1:NP_001138001.1 Gene:CG17454 / 7354399 FlyBaseID:FBgn0039977 Length:243 Species:Drosophila melanogaster
Sequence 2:NP_001006857.1 Gene:smndc1 / 448621 XenbaseID:XB-GENE-491591 Length:238 Species:Xenopus tropicalis


Alignment Length:253 Identity:109/253 - (43%)
Similarity:142/253 - (56%) Gaps:37/253 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADD----LHNYKLQLQQVEAALQTDPENEELLKLRSDLDEVITLTRDLIQTQLEEQNKSSYVEP 61
            ||:|    |..||.||||||:||..:.|||:||||:.||.|||.||:||:.:|           |
 Frog     1 MAEDLAKQLAGYKAQLQQVESALTANGENEDLLKLKKDLQEVIELTKDLLSSQ-----------P 54

  Fly    62 SSTKRDSSNYFDEIEAALLEAEKLVSAAKIWKKGDKCQAKWKEDRQYYDATIEDI-SSTGEVNVI 125
            |.|..|:.   |::.|         |.::.||.|:||.|.|.:|.|:|:|.||:| ...|...:.
 Frog    55 SETADDAC---DDMSA---------SGSQSWKVGEKCMAVWSDDGQWYEAEIEEIDEENGTAAIT 107

  Fly   126 FDAYQNRSTTHVNELRE----RTIRNEV--FPSNKRHR-PNQKEYLKKRKQKKQQRFKDLEEERE 183
            |..|.|...|.:..||.    |..:.:.  .|.:|:.. ..|:||.||:..||.||.|:||:|||
 Frog   108 FAGYGNAEVTSLLNLRPVEEGRKAKEDSGNLPMSKKEMIAAQREYKKKKALKKAQRIKELEQERE 172

  Fly   184 SDKNKWLNFNNKNQKKN--GMKARSIFASPDNVSGRVGVGTCGTAGKGMTDFTVGEKY 239
            ..|.||..||||...||  |...|||||||::|:|:|||||||.|.|.||.:....||
 Frog   173 DQKVKWQQFNNKAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17454NP_001138001.1 TroA-like <22..>116 CDD:294188 37/93 (40%)
TUDOR 95..142 CDD:119391 18/47 (38%)
smndc1NP_001006857.1 SMN <66..>124 CDD:310529 22/66 (33%)
Nuclear localization signal. /evidence=ECO:0000255 142..160 6/17 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I8702
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4290
Inparanoid 1 1.050 171 1.000 Inparanoid score I3987
OMA 1 1.010 - - QHG54699
OrthoDB 1 1.010 - - D1459016at2759
OrthoFinder 1 1.000 - - FOG0005574
OrthoInspector 1 1.000 - - otm48884
Panther 1 1.100 - - LDO PTHR13681
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4055
SonicParanoid 1 1.000 - - X3989
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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