DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spf30 and smr-1

DIOPT Version :10

Sequence 1:NP_001138001.1 Gene:Spf30 / 7354399 FlyBaseID:FBgn0039977 Length:243 Species:Drosophila melanogaster
Sequence 2:NP_001022932.1 Gene:smr-1 / 175281 WormBaseID:WBGene00004891 Length:239 Species:Caenorhabditis elegans


Alignment Length:254 Identity:72/254 - (28%)
Similarity:115/254 - (45%) Gaps:56/254 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADDLHNYKLQLQQVEAALQTDPENEELLKLRSDLDEVITLTRDLIQTQLEEQNKSSYVEPSSTK 65
            |.::|.:||||||||||||..||.|.|||||:.||.|:|:|..||.:|...|.::.:.|.|....
 Worm     1 MEEELASYKLQLQQVEAALLGDPTNVELLKLKEDLGEIISLQEDLAETDKAESSERAVVAPQVIH 65

  Fly    66 RDSSNYFDEIEAALLEAEKLVSAAKIWKKGDKCQAKWKEDRQYYDATIEDISSTGEVNVIFDAYQ 130
            :                         |..|::..|...:.::.: |.|:.::..| |.:.|.:..
 Worm    66 K-------------------------WTVGERVIAPHPDGKKVF-ARIDSLTPAG-VAITFTSTG 103

  Fly   131 NRSTTHVNELR---ERTIRNEVF--------PS---NKRHRPNQKEYLKKRKQKKQQRFKDLEEE 181
            .::.....:|:   |...:|..|        ||   .|:....:||..:::..||||:.|:|:..
 Worm   104 TKTIVDPADLQLPPENQRKNYAFDNTKSAAGPSTQHGKKEWQAEKERRRQKALKKQQKQKELDSI 168

  Fly   182 RESDKNKWLNFNNKNQKK--NGMKARSIFASPDNVSGRVGVGTCGTAGKGMTDFTVGEK 238
            ::.:|..|..||.|...|  .|:|..|...|..:       |:..::|.|      |||
 Worm   169 KDGEKKSWQKFNTKANAKGLKGLKKVSATGSSQD-------GSASSSGGG------GEK 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spf30NP_001138001.1 Tudor_SPF30 92..146 CDD:410470 10/56 (18%)
smr-1NP_001022932.1 None

Return to query results.
Submit another query.