DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17454 and SMNDC1

DIOPT Version :9

Sequence 1:NP_001138001.1 Gene:CG17454 / 7354399 FlyBaseID:FBgn0039977 Length:243 Species:Drosophila melanogaster
Sequence 2:NP_005862.1 Gene:SMNDC1 / 10285 HGNCID:16900 Length:238 Species:Homo sapiens


Alignment Length:249 Identity:107/249 - (42%)
Similarity:133/249 - (53%) Gaps:33/249 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADDLHNYKLQLQQVEAALQTDPENEELLKLRSDLDEVITLTRDLIQTQLEEQNKSSYVEPSSTK 65
            :|..|.:||.|||||||||..:.|||:||||:.||.|||.||:||:.||           ||.|.
Human     5 LAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQ-----------PSETL 58

  Fly    66 RDSSNYFDEIEAALLEAEKLVSAAKIWKKGDKCQAKWKEDRQYYDATIEDI-SSTGEVNVIFDAY 129
            ..|.::..            ......||.||||.|.|.||.|.|:|.||:| ...|...:.|..|
Human    59 ASSDSFAS------------TQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGY 111

  Fly   130 QNRSTT------HVNELRERTIRNEVFPSNKRHR-PNQKEYLKKRKQKKQQRFKDLEEERESDKN 187
            .|...|      .|.|.|:....:...|.:|:.. ..|:||.||:..||.||.|:||:|||..|.
Human   112 GNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKV 176

  Fly   188 KWLNFNNKNQKKN--GMKARSIFASPDNVSGRVGVGTCGTAGKGMTDFTVGEKY 239
            ||..|||:...||  |...|||||||::|:|:|||||||.|.|.||.:....||
Human   177 KWQQFNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17454NP_001138001.1 TroA-like <22..>116 CDD:294188 37/93 (40%)
TUDOR 95..142 CDD:119391 21/53 (40%)
SMNDC1NP_005862.1 SMN <69..>124 CDD:310529 21/54 (39%)
Nuclear localization signal. /evidence=ECO:0000255 142..160 6/17 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165153165
Domainoid 1 1.000 74 1.000 Domainoid score I9221
eggNOG 1 0.900 - - E1_KOG3026
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4290
Inparanoid 1 1.050 169 1.000 Inparanoid score I4145
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54699
OrthoDB 1 1.010 - - D1459016at2759
OrthoFinder 1 1.000 - - FOG0005574
OrthoInspector 1 1.000 - - oto90583
orthoMCL 1 0.900 - - OOG6_103070
Panther 1 1.100 - - LDO PTHR13681
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4055
SonicParanoid 1 1.000 - - X3989
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.800

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