DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stard13 and cv-c

DIOPT Version :9

Sequence 1:XP_031751944.1 Gene:stard13 / 734093 XenbaseID:XB-GENE-478898 Length:1349 Species:Xenopus tropicalis
Sequence 2:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster


Alignment Length:1499 Identity:426/1499 - (28%)
Similarity:677/1499 - (45%) Gaps:360/1499 - (24%)


- Green bases have known domain annotations that are detailed below.


 Frog     3 GLLEDEDNSFYSMSYMHFLTAENMPYQFPAGRNEYSRQ---MEINDNILAMGTKIANLPP----- 59
            |.:::::||..|.|     ..|.......:|::..|..   ::.::|...:||.   .||     
  Fly  1061 GAVDEDNNSTSSSS-----ACEEATGVLSSGKSGISLDSSGLDNDNNESGIGTA---TPPKDMSH 1117

 Frog    60 ------IKEHHVTLTETEERPCCVMVGKEFKSEEVGGAILYPPLAETNHFLAANANAKTRYIQVV 118
                  ::.||    ....|.|   .|....:|.|...                           
  Fly  1118 YWKSHHLQHHH----HHHHRKC---TGSAQDNESVSSL--------------------------- 1148

 Frog   119 EHEPSAILFRDFSLDSSIPGAIAPNILN-----------SETSED-----------KEVYDE--- 158
                .|:....|....|:..:..|::|.           :|:.:|           .:.|||   
  Fly  1149 ----EALRKMKFQKSGSVASSDDPDVLEVLSQCGSGGEANESQDDMLDEEKDKMSKSQDYDEIWD 1209

 Frog   159 ----DEEEESDENGDVFTELP-------------------------HYESMFPGLRRNQCHPISL 194
                |.:..|...|...|..|                         ||.|..|.:...:..||..
  Fly  1210 CDCTDGDASSASGGGGVTATPVILRRKYTAPPPILVPRTQRSHSLDHYHSPQPLVHPRKVLPIHH 1274

 Frog   195 NG---------NIIFNFEDVCQILSSTQSGAEQ-------------TLNEGEGNNLMEERYRWSE 237
            :.         :::...|....:||.:.:.|.|             :|:.|.|::...:......
  Fly  1275 HALKSKERGQLSLVLRQEPFQSLLSPSATAANQLHHFVELPSPSSASLHSGLGDSGGIQELCTKS 1339

 Frog   238 SMTCLMMKLEQLNVDIEDAVMAGVSSLNLSPTDCSTQLANSLVTDRGSPELEAKEACDWLRAAGF 302
            :...:::|..:::...:          |......:.:.:.| .:||...|:||.|||.|||||||
  Fly  1340 NSAPMLLKEREMSRRFD----------NFEAQHLTLRYSRS-QSDRYLAEIEAVEACKWLRAAGF 1393

 Frog   303 PQYAQLYEDSQFPIDIASVKRDHDFLDRDHVEPLCRRLKTLNKCASMKLDVSFQ---RKKSEDSD 364
            |||||:|||.|||||:.:|.:||..|:.|.::.|.|||..||:||:|:||.|.:   .::.|:||
  Fly  1394 PQYAQMYEDHQFPIDLNNVAKDHTNLENDQLQSLYRRLCVLNRCATMRLDQSHKPQTPQQKEESD 1458

 Frog   365 EEDLCAISDKWRFQRLSRQWSRVDDIDSLFERSERLGSSGEMKNTTSSESVLTDLSEPEICSIHS 429
            :|:. |:|:.|.||...|:|||:                |||.         .:|..|.:.|::.
  Fly  1459 DENF-ALSEHWTFQPHIRRWSRI----------------GEMG---------LELPPPGLLSLNV 1497

 Frog   430 GSSGGSDCRCSYVGNSASRETFECADTMCIHDPNSMTILPPW-------PKDVS-------DGKL 480
            ..:..|       ...:|.:.||       .|...:|::.|.       |.|.|       .|:|
  Fly  1498 EKTESS-------SKESSPDRFE-------EDGAGITLVTPGCSKAGGIPNDGSSLGEGSDSGRL 1548

 Frog   481 NAKNEKPAHNKTKTFLKCMGTLRSKGTYGKSKGLQRTGAIVISEPILQLEPEPLKPIPQLEPDPL 545
            .....:...::.|..|:.:.:::|:    :.|...|...::....:|.|.               
  Fly  1549 RRSGSERIKDQAKALLRRVESIKSR----RRKRQNRENVVISGPTVLDLS--------------- 1594

 Frog   546 KTMSCVGNGQVQDSSMNFTATGNLNSVSEIQTSTESSPCLKEMQALEPNKRGGMYLEDIDVFTDL 610
                            .|....:|.....:.::..|...|..|...   .:...:..|:.|    
  Fly  1595 ----------------QFGQRSSLRKPDAVYSTPPSPSALSPMHTF---PKAPFFGNDLKV---- 1636

 Frog   611 GTAKAGHNHNHDFHSQEDLVVHIPKDHKPGTFPKALSIESLSPTENFYGVNWRSGGIPLSRQKGI 675
                  .:|:.:|.|        |....|...|........||...|        ..|:|:.|..
  Fly  1637 ------PSHSDNFLS--------PNRSSPKRTPTTPRSMRTSPLHFF--------SSPMSQLKEG 1679

 Frog   676 RAKEPRIM---SSRCSRGSRLSVYDNVPGSHLYASTGDLMDLDRDDLFPHLDDVLQHINGLQQSV 737
            ::.:....   |...|.|.:||:............||.:     ||:..|.|           |.
  Fly  1680 KSDDSSSYYSDSQESSTGGKLSLRKPSKARRFLQRTGKV-----DDIGAHSD-----------SE 1728

 Frog   738 YHWSKDIMPDLQDDDFSVGE--------SGTSNFHLPNPMSMD-FEGNSISDGRTTPSDMERDAT 793
            .|..:.::  ::|.:.:..|        .|:.|.. .:|...| |..:|.....|:..:.:    
  Fly  1729 CHQGRKLL--IKDANSNTTEVKVKKLTRGGSLNLG-KDPKKRDGFRSSSFRSRSTSRKEAK---- 1786

 Frog   794 SLNDSDTTGTRERRDSGVGASLTRTNRR---FRWSSFQLSHQ----------------QSSSGAS 839
              ||.||          .||:....::|   .||.|||:..:                |..:| .
  Fly  1787 --NDEDT----------AGATTNGGSKRQPVVRWHSFQMEERPNMIFRKCFSKKIEPLQEDAG-G 1838

 Frog   840 LQISNQSAGQLNLLQKFSLLRLTAIMEKYSLSNKHGWTWSVPKFMKRMKGPDFKDKTIFGVPLMV 904
            :..:..|||||.:::|.:|:.||..||:|..|::.||.|.:|||:|::|.||:|||.:|||||::
  Fly  1839 MPFAAMSAGQLQIIRKLALVTLTGHMERYCPSHRSGWNWELPKFIKKIKMPDYKDKKVFGVPLLM 1903

 Frog   905 HVQRTGQPLPQSIQQALRFLRSHCLDQVGLFRKSGVKSRIQALRQMNETASENVSYED----QCA 965
            .:||:||.||.:::.|.|:|:.:.|||||:|||||.||||..||:..|.........|    |.|
  Fly  1904 ILQRSGQTLPLAVRAAFRWLQLNALDQVGIFRKSGGKSRIMKLREQIEVTDSTAECMDVFDLQQA 1968

 Frog   966 YDVADMMKQFFRDLPEPLLTSKLGETFLHIYQYVPKDQRLQAVQSAIMLMSDENREVLQTLLCFL 1030
            ||||||:||:||:|||.|||:|:.|||:.|:|::|.:.||.|||.|::|:.|||||:|..||.||
  Fly  1969 YDVADMLKQYFRELPESLLTTKMSETFVAIFQHLPAEVRLDAVQCAVLLLPDENREILYVLLEFL 2033

 Frog  1031 SDV-TSVEENQMTPMNLAVCLAPSLFHLNL----LKKDNSPRAIQKKYATGRPDQKDLNENFAAT 1090
            :.| .:.::||||..||.||||.|:||.::    .....|||  :|...:|.||.|:|.|..|:.
  Fly  2034 TIVAANSQQNQMTSNNLGVCLAQSIFHSSISTGSASVSASPR--RKGKGSGMPDMKELAEAKASH 2096

 Frog  1091 QGLAHMIMECNRLFEIPHDVIAQSRNSYVEADVHVLTMEELGK--QLEEEGGSVSTYFESTIQGL 1153
            :.|:.||....:::....:.:::...||:| :...|.:|.||:  |.....|.:.....:||   
  Fly  2097 ECLSFMIEHYKQIYTAAKEKLSKCNFSYME-ESKPLPLEALGEGMQFHNWRGYLYECTSATI--- 2157

 Frog  1154 QKEAKEKFKGWMSLSSAENT--DLAYKKVGDGNSLRVWKVSVEVEAPPSVVLNRILRERQLWDDD 1216
             ||.:||.:||.|::|..::  |:||||||||:.||:|:.|.|:|.||..||..::::|..||.:
  Fly  2158 -KEGREKTRGWFSINSLNDSSVDIAYKKVGDGHPLRLWRCSTEIEGPPKEVLEFVIKQRASWDTN 2221

 Frog  1217 LLQSKVIESLDNQTEVYQYVLNSMAPHPSRDFVVLRSWRTDLPKGICALAAVSVEHDEAH-LIGG 1280
            |||.:.::.||::||:|||.|:...   :.||.|||||:||||:|.|.:...|::|.:|. |.|.
  Fly  2222 LLQCQTVKKLDDRTEIYQYALDGQL---TTDFCVLRSWQTDLPRGACVIVETSIDHAKAKPLFGA 2283

 Frog  1281 VRAAVLDTRYLIEPCGSGKSKLTHISRVDLKGHSPEWYNKCFGHLCASEALRIRNSFQPISTEGP 1345
            ||..||.:||||||||||:|::.|::|||:||.:||||||.:||:|:....|||.:|:.:: :||
  Fly  2284 VRGVVLASRYLIEPCGSGRSRVMHLARVDVKGKTPEWYNKNYGHICSHYLSRIRLAFKHVA-DGP 2347

 Frog  1346 ETKI 1349
            |:|:
  Fly  2348 ESKV 2351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stard13XP_031751944.1 SAM_DLC2 287..350 CDD:188991 39/62 (63%)
RhoGAP_DLC1 894..1109 CDD:239840 104/223 (47%)
SRPBCC 1136..1340 CDD:417480 96/206 (47%)
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937 36/58 (62%)
RhoGAP_DLC1 1893..2116 CDD:239840 104/224 (46%)
SRPBCC 2148..2343 CDD:301327 95/201 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 200 1.000 Domainoid score I2979
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001209
OrthoInspector 1 1.000 - - otm47768
Panther 1 1.100 - - O PTHR12659
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X752
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.100

Return to query results.
Submit another query.