DRSC/TRiP Functional Genomics Resources

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Protein Alignment UBB and Nedd8

DIOPT Version :10

Sequence 1:NP_061828.1 Gene:UBB / 7314 HGNCID:12463 Length:229 Species:Homo sapiens
Sequence 2:NP_609919.1 Gene:Nedd8 / 35151 FlyBaseID:FBgn0032725 Length:84 Species:Drosophila melanogaster


Alignment Length:79 Identity:45/79 - (56%)
Similarity:61/79 - (77%) Gaps:0/79 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |.|.|||||||.|.:::||:|.::.:|.::::||||||.||||||:|||:.|.:|.:||.:|..|
  Fly     1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGS 65

Human    66 TLHLVLRLRGGMQI 79
            .|||||.||||..|
  Fly    66 VLHLVLALRGGDSI 79

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UBBNP_061828.1 Ubl_ubiquitin 1..76 CDD:340501 42/74 (57%)
Ubl_ubiquitin 77..152 CDD:340501 1/3 (33%)
Ubl_ubiquitin 153..228 CDD:340501
Nedd8NP_609919.1 Ubl_NEDD8 3..76 CDD:340504 41/72 (57%)
Blue background indicates that the domain is not in the aligned region.

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