DRSC/TRiP Functional Genomics Resources

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Protein Alignment TRPS1 and grn

DIOPT Version :9

Sequence 1:NP_054831.2 Gene:TRPS1 / 7227 HGNCID:12340 Length:1294 Species:Homo sapiens
Sequence 2:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster


Alignment Length:723 Identity:153/723 - (21%)
Similarity:221/723 - (30%) Gaps:192/723 - (26%)


- Green bases have known domain annotations that are detailed below.


Human   469 GKQHGAVQSGGLNPELNDKLSRGSVINQN--------DLAKSSEGETMTKTDKSSSGAKKKDFS- 524
            |...|....||::|:.|...|.||.:..:        ..|.||.|..........||....|.| 
  Fly    23 GGSSGGGNGGGVSPQTNGLGSAGSSLAHSHHSLSSGASSAGSSVGVGSALGGGGGSGLDTSDMSA 87

Human   525 -----SKGAEDNMVTSY------------NCQFCDFRYSKSHGPDVIVVGPLLRHYQQLHNIHKC 572
                 |.|.......||            :.|.|...:   |.|    :.|.|            
  Fly    88 FYALESNGHHRRYYPSYHQHTSRMPSTHASPQVCRPHF---HTP----LSPWL------------ 133

Human   573 TIKHCPFCPRGLCSPEKHLGEITYPFAC-RKSNCSHCALLLLHLSPGAAGSSRVKHQCHQCSF-- 634
            |.:|..|.|....|    :|:    ||| ::....|        ..|..|.|.......|.||  
  Fly   134 TSEHKSFAPASAWS----MGQ----FACPQEPQVEH--------KLGQMGQSHQTTAAGQHSFPF 182

Human   635 -------TTPD-VDVLLFHYESV-----HE-----------SQASDVKQ-----EANHLQGS--- 667
                   :||| |......|::|     |:           |.|.|:|.     .|:...||   
  Fly   183 PPTPPKDSTPDSVQTGPSEYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGTT 247

Human   668 --------DGQQSVKESKEHSCTKCDFITQVEEEISRHYRRAHSCYKCRQCSFTAADTQSLLEHF 724
                    :|..|...|..:|.:...   |.:::..:..::..|.......|.|:|.:.:.....
  Fly   248 HTSTPKQREGTASTTNSSSNSSSSQQ---QQQQQQQQQQQQQQSSSNTTASSNTSASSSAAAASL 309

Human   725 NTVHCQEQDITTANGEEDG--------------------------------HAISTIKEEPKIDF 757
            :.. ......|::||..||                                ||.:   .......
  Fly   310 SAA-VAASAATSSNGLFDGTAQAYSSGGSGGGGGGGSGSGGYDTSSYASYHHAAA---HHQAAAV 370

Human   758 RVYNLLTPDSKMGEPVSESVVKREKLEEKDGLKEKVWTESSSDDLRNVTWR-GADILRGSPSYTQ 821
            ...|:....|.....|..|:...:................||..|..:... |.....||.|...
  Fly   371 AAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSGSSSGLHGLGGSVGGTAGMGSMSGNS 435

Human   822 ASLGLLTPVSGTQE-------QTKTLRDSPNVEAAHLARPIYGLAVETKGFLQGAPAGGEKSGAL 879
            ...|.|:..||...       ..|.:|..|...|.  .|........:....:....|.....|.
  Fly   436 GGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTSAE--GRECVNCGATSTPLWRRDGTGHYLCNAC 498

Human   880 PQQYPASGEN------KSKDESQSLLRRRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQK 938
            ...|..:|:|      |.:...|||....:.:|..||||.||.|:|||:||:|..||||||||.|
  Fly   499 GLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYK 563

Human   939 LHSTPRPLNIIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRGSNEEQVNG-------SPLE-- 994
            ||:..|||.:.|:.     |:.|.||      |.::...|:..|.....:.|       .||:  
  Fly   564 LHNVNRPLTMKKEG-----IQTRNRK------LSSKSKKKKGLGGGCLPIGGHLGMGDFKPLDPS 617

Human   995 ----------RRSEDHLTES-HQREIPLPSLSKYEAQGSLTKSHSAQQPVLVSQTLD--IHKRMQ 1046
                      .....||:.. |.....:.........|:|..|...|.....:.:|.  :....|
  Fly   618 KGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGLQGGFSTAGSLSGAVVPHSQ 682

Human  1047 PLHIQIKS 1054
            |.|:.:.|
  Fly   683 PYHLGLSS 690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRPS1NP_054831.2 ZnF_GATA 904..947 CDD:214648 27/42 (64%)
ZnF_GATA 908..964 CDD:238123 30/55 (55%)
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 7/48 (15%)
ZnF_GATA 473..517 CDD:238123 6/43 (14%)
ZnF_GATA 529..578 CDD:214648 29/53 (55%)
ZnF_GATA 533..583 CDD:238123 30/54 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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