DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TRPS1 and GATAd

DIOPT Version :9

Sequence 1:NP_054831.2 Gene:TRPS1 / 7227 HGNCID:12340 Length:1294 Species:Homo sapiens
Sequence 2:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster


Alignment Length:791 Identity:163/791 - (20%)
Similarity:274/791 - (34%) Gaps:217/791 - (27%)


- Green bases have known domain annotations that are detailed below.


Human   360 STELEQHFLQTHPNKIK----ASLPSSEVAKPSEKNSNKSIPA--------LQSSDSGDLGKWQD 412
            |.:::...|..|.|:.|    .|:||:..||.||:.....:.:        .:|..|.|    .:
  Fly   104 SQQIQSQTLHHHQNQTKIHYTPSVPSAADAKSSERERQCQLESDIAERSTVFKSQSSSD----HE 164

Human   413 KITVKAGDDTPVG-------YSVPIKPLDS-----SRQNGTEATSYYWCKFCSFSCESSSSLKLL 465
            .|.......:|..       .|.|::..:.     ::|:|.|.||.           :::::...
  Fly   165 HIEYSGETPSPSASLSQSQTKSEPMREEEEHQHNHNQQSGREETSV-----------NTTNISGT 218

Human   466 EHYGKQHGAVQSGGLNPELNDKLSRGSVIN--QND-LAKSSEGETMTKTDKSSSGAKKKDFSSKG 527
            ::|||:||...|.  :|.|..::.....|.  .|| |.....|:...|.|              .
  Fly   219 DNYGKEHGRDDSS--SPHLTFQIFNCLSIKALPNDGLPNVVCGDCRQKLD--------------S 267

Human   528 AEDNMVTSYNCQFC--DF-RYSKSHGPDVIVVGPLLRHYQQLHNIHKCTIKHCPFCPRGLCSPEK 589
            .|.....::|.|..  :| ..||:..||                            |..|   |.
  Fly   268 FEKFRTMAHNSQIALKEFLNISKNLRPD----------------------------PNDL---ET 301

Human   590 HLGEITYPFACRKSNCSHCALLLLHLSPGAAGSSRVKHQCHQC-SFTTPDVD--------VLLFH 645
            .|..|     .:.|:.:..|..|..||.    .|:||:...:. |...|.:|        .:..|
  Fly   302 KLDAI-----LKASSEAIAAKALTELST----FSKVKYDHSKLDSSIQPGLDRKIEISNQEMPAH 357

Human   646 --YESVHESQASDVKQEANHLQGSDGQQ-SVKESKEHSCTKCDFITQVEE------EISRHYRRA 701
              |.|:.:|......|::..:.||...| ..|..|:....|.:.:.|..|      :||:....:
  Fly   358 SLYPSLFKSITMKSDQKSKAMSGSSHSQFDSKLQKDSDIEKYENLQQQLETAAVLMDISKKIVIS 422

Human   702 HSCYKCRQCSFTAA-DT------------------QSLLEHFNTVHCQEQDITTANGEEDGHAI- 746
            ..|...:...|:|| ||                  |..:|...:|..|:.|.:........|.. 
  Fly   423 PPCSNPQSPCFSAAVDTSIKSSVIKSKRPSNQNEIQDGVEIDLSVKKQKNDYSNQRNAAPIHHFC 487

Human   747 --------STIKEEPKIDFRVYNLLT-----PDSKMGEPVSESVVKREKLEEKDGLKEKVWTESS 798
                    |.::.|.  ||:.|::..     .|.|...|.:.:....:..:..|..|.::...||
  Fly   488 QTPMLDIQSHLRSEE--DFQNYSITINQVGGSDFKSKAPKASTGSLLDSGDSSDSHKLEMDITSS 550

Human   799 SDDLRNVTWRGADILRGSPSYTQASLGLLTPVSGTQEQTKTLRDSP------NVEAAHLARPIYG 857
            .:|.:.     .|.|....:...|:..|...::  :...|:..|:|      |:.:...|.|:..
  Fly   551 INDRKT-----PDSLSSDHATDAATTQLWQALA--RSAAKSKEDNPASQIFRNMMSQPFAFPVPS 608

Human   858 LAVETK---------GFLQGAPAGGEKSGALPQQYP---------------------ASGENKSK 892
            ....||         ..|..|.:...|.....|.:|                     |:.::|..
  Fly   609 TVSFTKVPEEPIALLKDLSEAQSSKSKPCRRKQSFPTKTDCIDVVNENVTDTYTTSEATPDDKKD 673

Human   893 DESQSLLRRRRGS--GVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPLNIIKQNNGE 955
            ..:.:|.....|:  .:.|:||.|..|::||::..|..||||||||.|||...||          
  Fly   674 KRNINLFNAIPGAQKDMSCSNCGTLTTTIWRRSVRGEMVCNACGLYFKLHGVNRP---------- 728

Human   956 QIIRRRT--RKRLNPEALQAEQLNKQQRGSNEEQVNGSPLERRSEDHLTESHQREIPLPSLSKYE 1018
            ..:||.|  .:|..|:.|:..:...:|..|      .|.:|...:|.||......|....|:|::
  Fly   729 HSMRRDTIHTRRRRPKELERSKKKHKQMSS------CSSIETTKQDFLTARESLAISGLVLNKFK 787

Human  1019 AQGSLTKSHSA 1029
            .:...|::.:|
  Fly   788 KEIDDTETPAA 798

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRPS1NP_054831.2 ZnF_GATA 904..947 CDD:214648 22/44 (50%)
ZnF_GATA 908..964 CDD:238123 24/57 (42%)
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871 13/71 (18%)
ZnF_GATA 688..736 CDD:214648 23/57 (40%)
ZnF_GATA 691..742 CDD:238123 25/60 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141002
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

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